4RCA

Crystal structure of human PTPdelta and human Slitrk1 complex

Summary for 4RCA

• Entry DOI: 10.2210/pdb4rca/pdb
• Descriptor: Receptor-type tyrosine-protein phosphatase delta, SLIT and NTRK-like protein 1, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... (5 entities in total)
• Functional Keywords: leucine rich-repeat, ig-like domain, synaptic adhesion, signaling protein
• Biological source: Homo sapiens (human); More
• Total number of polymer chains: 2
• Total formula weight: 63277.84

Authors

Kim, H.M.,Park, B.S.,Kim, D.,Lee, S.G. (deposition date: 2014-09-15, release date: 2014-11-19, Last modification date: 2023-09-20)

Primary citation

Um, J.W.,Kim, K.H.,Park, B.S.,Choi, Y.,Kim, D.,Kim, C.Y.,Kim, S.J.,Kim, M.,Ko, J.S.,Lee, S.G.,Choii, G.,Nam, J.,Heo, W.D.,Kim, E.,Lee, J.O.,Ko, J.,Kim, H.M.
Structural basis for LAR-RPTP/Slitrk complex-mediated synaptic adhesion.
Nat Commun, 5:5423-5423, 2014

PubMed Abstract: Synaptic adhesion molecules orchestrate synaptogenesis. The presynaptic leukocyte common antigen-related receptor protein tyrosine phosphatases (LAR-RPTPs) regulate synapse development by interacting with postsynaptic Slit- and Trk-like family proteins (Slitrks), which harbour two extracellular leucine-rich repeats (LRR1 and LRR2). Here we identify the minimal regions of the LAR-RPTPs and Slitrks, LAR-RPTPs Ig1-3 and Slitrks LRR1, for their interaction and synaptogenic function. Subsequent crystallographic and structure-guided functional analyses reveal that the splicing inserts in LAR-RPTPs are key molecular determinants for Slitrk binding and synapse formation. Moreover, structural comparison of the two Slitrk1 LRRs reveal that unique properties on the concave surface of Slitrk1 LRR1 render its specific binding to LAR-RPTPs. Finally, we demonstrate that lateral interactions between adjacent trans-synaptic LAR-RPTPs/Slitrks complexes observed in crystal lattices are critical for Slitrk1-induced lateral assembly and synaptogenic activity. Thus, we propose a model in which Slitrks mediate synaptogenic functions through direct binding to LAR-RPTPs and the subsequent lateral assembly of LAR-RPTPs/Slitrks complexes.

PubMed: 25394468
DOI: 10.1038/ncomms6423

Experimental method

X-RAY DIFFRACTION (2.9908 Å)