4NCJ

Crystal Structure of Pyrococcus furiosis Rad50 R805E mutation with ADP Beryllium Flouride

4NCJ の概要

• エントリーDOI: 10.2210/pdb4ncj/pdb
• 関連するPDBエントリー: 4NCH 4NCI 4NCK
• 分子名称: DNA double-strand break repair Rad50 ATPase, ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, ... (5 entities in total)
• 機能のキーワード: adenosine triphosphatase, dna repair, dna binding protein, fungal protein
• 由来する生物種: Pyrococcus furiosus; 詳細
• タンパク質・核酸の鎖数: 4
• 化学式量合計: 156392.19

構造登録者

Classen, S.,Williams, G.J.,Arvai, A.S.,Williams, R.S. (登録日: 2013-10-24, 公開日: 2014-03-05, 最終更新日: 2024-02-28)

主引用文献

Deshpande, R.A.,Williams, G.J.,Limbo, O.,Williams, R.S.,Kuhnlein, J.,Lee, J.H.,Classen, S.,Guenther, G.,Russell, P.,Tainer, J.A.,Paull, T.T.
ATP-driven Rad50 conformations regulate DNA tethering, end resection, and ATM checkpoint signaling.
Embo J., 33:482-500, 2014

PubMed Abstract: The Mre11-Rad50 complex is highly conserved, yet the mechanisms by which Rad50 ATP-driven states regulate the sensing, processing and signaling of DNA double-strand breaks are largely unknown. Here we design structure-based mutations in Pyrococcus furiosus Rad50 to alter protein core plasticity and residues undergoing ATP-driven movements within the catalytic domains. With this strategy we identify Rad50 separation-of-function mutants that either promote or destabilize the ATP-bound state. Crystal structures, X-ray scattering, biochemical assays, and functional analyses of mutant PfRad50 complexes show that the ATP-induced 'closed' conformation promotes DNA end binding and end tethering, while hydrolysis-induced opening is essential for DNA resection. Reducing the stability of the ATP-bound state impairs DNA repair and Tel1 (ATM) checkpoint signaling in Schizosaccharomyces pombe, double-strand break resection in Saccharomyces cerevisiae, and ATM activation by human Mre11-Rad50-Nbs1 in vitro, supporting the generality of the P. furiosus Rad50 structure-based mutational analyses. These collective results suggest that ATP-dependent Rad50 conformations switch the Mre11-Rad50 complex between DNA tethering, ATM signaling, and 5' strand resection, revealing molecular mechanisms regulating responses to DNA double-strand breaks.

PubMed: 24493214
DOI: 10.1002/embj.201386100

実験手法

X-RAY DIFFRACTION (2 Å)