4LT3

HEWL co-crystallized with Carboplatin in non-NaCl conditions: crystal 2 processed using the XDS software package

4LT3 の概要

• エントリーDOI: 10.2210/pdb4lt3/pdb
• 関連するPDBエントリー: 4DD7 4DD9 4G4C 4LT0 4LT1 4LT2
• 分子名称: Lysozyme C, (4S)-2-METHYL-2,4-PENTANEDIOL, DIMETHYL SULFOXIDE, ... (5 entities in total)
• 機能のキーワード: histidine, mpd, avoid partial conversion to cisplatin, pair-wise refinement technique, dpi, resolution limit choice, glycosyl hydrolase, hydrolase
• 由来する生物種: Gallus gallus (Chicken)
• 細胞内の位置: Secreted: P00698
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 15622.54

構造登録者

Tanley, S.W.M.,Diederichs, K.,Kroon-Batenburg, L.M.J.,Schreurs, A.M.M.,Helliwell, J.R. (登録日: 2013-07-23, 公開日: 2014-07-23, 最終更新日: 2024-11-06)

主引用文献

Tanley, S.W.,Diederichs, K.,Kroon-Batenburg, L.M.,Levy, C.,Schreurs, A.M.,Helliwell, J.R.
Carboplatin binding to histidine.
Acta Crystallogr.,Sect.F, 70:1135-1142, 2014

PubMed Abstract: Carboplatin is a second-generation platinum anticancer agent used for the treatment of a variety of cancers. Previous X-ray crystallographic studies of carboplatin binding to histidine (in hen egg-white lysozyme; HEWL) showed the partial conversion of carboplatin to cisplatin owing to the high NaCl concentration used in the crystallization conditions. HEWL co-crystallizations with carboplatin in NaBr conditions have now been carried out to confirm whether carboplatin converts to the bromine form and whether this takes place in a similar way to the partial conversion of carboplatin to cisplatin observed previously in NaCl conditions. Here, it is reported that a partial chemical transformation takes place but to a transplatin form. Thus, to attempt to resolve purely carboplatin binding at histidine, this study utilized co-crystallization of HEWL with carboplatin without NaCl to eliminate the partial chemical conversion of carboplatin. Tetragonal HEWL crystals co-crystallized with carboplatin were successfully obtained in four different conditions, each at a different pH value. The structural results obtained show carboplatin bound to either one or both of the N atoms of His15 of HEWL, and this particular variation was dependent on the concentration of anions in the crystallization mixture and the elapsed time, as well as the pH used. The structural details of the bound carboplatin molecule also differed between them. Overall, the most detailed crystal structure showed the majority of the carboplatin atoms bound to the platinum centre; however, the four-carbon ring structure of the cyclobutanedicarboxylate moiety (CBDC) remained elusive. The potential impact of the results for the administration of carboplatin as an anticancer agent are described.

PubMed: 25195881
DOI: 10.1107/S2053230X14016161

実験手法

X-RAY DIFFRACTION (2 Å)