4GC2

Crystal structure of the bacteriocin LLPA from pseudomonas sp. in complex with GlcNAc beta(1-2)Man alpha(1-3)[GlcNAc beta(1-2)Man alpha(1-6)]Man

4GC2 の概要

• エントリーDOI: 10.2210/pdb4gc2/pdb
• 関連するPDBエントリー: 3M7H 3M7J 4GC1
• 分子名称: Putidacin L1, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-2)-alpha-D-mannopyranose-(1-6)]alpha-D-mannopyranose (3 entities in total)
• 機能のキーワード: monocot-lectin fold, bacteriocin, mannose based carbohydrates, antimicrobial protein
• 由来する生物種: Pseudomonas sp. BW11M1
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 60898.26

構造登録者

Garcia-Pino, A.,Loris, R. (登録日: 2012-07-29, 公開日: 2013-04-10, 最終更新日: 2023-09-13)

主引用文献

Ghequire, M.G.,Garcia-Pino, A.,Lebbe, E.K.,Spaepen, S.,Loris, R.,De Mot, R.
Structural Determinants for Activity and Specificity of the Bacterial Toxin LlpA.
Plos Pathog., 9:e1003199-e1003199, 2013

PubMed Abstract: Lectin-like bacteriotoxic proteins, identified in several plant-associated bacteria, are able to selectively kill closely related species, including several phytopathogens, such as Pseudomonas syringae and Xanthomonas species, but so far their mode of action remains unrevealed. The crystal structure of LlpABW, the prototype lectin-like bacteriocin from Pseudomonas putida, reveals an architecture of two monocot mannose-binding lectin (MMBL) domains and a C-terminal β-hairpin extension. The C-terminal MMBL domain (C-domain) adopts a fold very similar to MMBL domains from plant lectins and contains a binding site for mannose and oligomannosides. Mutational analysis indicates that an intact sugar-binding pocket in this domain is crucial for bactericidal activity. The N-terminal MMBL domain (N-domain) adopts the same fold but is structurally more divergent and lacks a functional mannose-binding site. Differential activity of engineered N/C-domain chimers derived from two LlpA homologues with different killing spectra, disclosed that the N-domain determines target specificity. Apparently this bacteriocin is assembled from two structurally similar domains that evolved separately towards dedicated functions in target recognition and bacteriotoxicity.

PubMed: 23468636
DOI: 10.1371/journal.ppat.1003199

実験手法

X-RAY DIFFRACTION (2.1201 Å)