4ENM

Crystal structure of S. pombe Atl1 in complex with damaged DNA containing O6-benzylguanine

4ENM の概要

• エントリーDOI: 10.2210/pdb4enm/pdb
• 関連するPDBエントリー: 4ENJ 4ENK 4ENN
• 分子名称: Alkyltransferase-like protein 1, DNA (5'-D(*GP*CP*CP*AP*TP*GP*(BZG)P*CP*TP*AP*GP*TP*A)-3'), DNA (5'-D(*CP*TP*AP*CP*TP*AP*GP*CP*CP*AP*TP*GP*G)-3') (3 entities in total)
• 機能のキーワード: alkyltransferase, dna repair, nucleotide excision repair, ner, base repair, dna, dna damage, guanine, alkylation, dna binding protein-dna complex, dna binding protein/dna
• 由来する生物種: Schizosaccharomyces pombe (Fission yeast); 詳細
• タンパク質・核酸の鎖数: 3
• 化学式量合計: 21695.73

構造登録者

Tubbs, J.L.,Arvai, A.S.,Tainer, J.A. (登録日: 2012-04-13, 公開日: 2012-06-20, 最終更新日: 2023-09-13)

主引用文献

Latypov, V.F.,Tubbs, J.L.,Watson, A.J.,Marriott, A.S.,McGown, G.,Thorncroft, M.,Wilkinson, O.J.,Senthong, P.,Butt, A.,Arvai, A.S.,Millington, C.L.,Povey, A.C.,Williams, D.M.,Santibanez-Koref, M.F.,Tainer, J.A.,Margison, G.P.
Atl1 Regulates Choice between Global Genome and Transcription-Coupled Repair of O(6)-Alkylguanines.
Mol.Cell, 47:50-60, 2012

PubMed Abstract: Nucleotide excision repair (NER) has long been known to remove DNA lesions induced by chemical carcinogens, and the molecular mechanism has been partially elucidated. Here we demonstrate that in Schizosaccharomyces pombe a DNA recognition protein, alkyltransferase-like 1 (Atl1), can play a pivotal role in selecting a specific NER pathway, depending on the nature of the DNA modification. The relative ease of dissociation of Atl1 from DNA containing small O(6)-alkylguanines allows accurate completion of global genome repair (GGR), whereas strong Atl1 binding to bulky O(6)-alkylguanines blocks GGR, stalls the transcription machinery, and diverts the damage to transcription-coupled repair. Our findings redraw the initial stages of the NER process in those organisms that express an alkyltransferase-like gene and raise the question of whether or not O(6)-alkylguanine lesions that are poor substrates for the alkyltransferase proteins in higher eukaryotes might, by analogy, signal such lesions for repair by NER.

PubMed: 22658721
DOI: 10.1016/j.molcel.2012.04.028

実験手法

X-RAY DIFFRACTION (2.8402 Å)