Vaccinia D8L ectodomain structure

Summary for 4E9O

Related1YPY 2I9L
DescriptorIMV membrane protein, IODIDE ION (3 entities in total)
Functional Keywordscah alpha fold, vp7 motif, beta sheet, cell surface chondroitin binding, viral entry, chondroitin sulfate, viral protein
Biological sourceVaccinia virus
Total number of polymer chains1
Total molecular weight32844.03
Matho, M.H.,Zajonc, D.M. (deposition date: 2012-03-21, release date: 2012-06-06, Last modification date: 2012-07-25)
Primary citation
Matho, M.H.,Maybeno, M.,Benhnia, M.R.,Becker, D.,Meng, X.,Xiang, Y.,Crotty, S.,Peters, B.,Zajonc, D.M.
Structural and Biochemical Characterization of the Vaccinia Virus Envelope Protein D8 and Its Recognition by the Antibody LA5.
J.Virol., 86:8050-8058, 2012
PubMed: 22623786 (PDB entries with the same primary citation)
DOI: 10.1128/JVI.00836-12
MImport into Mendeley
Experimental method

Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.18970.4%0.5%6.1%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution