4DBM

Aplysia californica-AChBP in complex with triazole 18

Summary for 4DBM

• Entry DOI: 10.2210/pdb4dbm/pdb
• Related: 2BYN
• Descriptor: Soluble acetylcholine receptor, alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... (5 entities in total)
• Functional Keywords: in situ click-chemistry, achbp, nicotinic, triazole, tropane, quinolinone, cys-loop receptor homologue, acetylcholine-binding protein
• Biological source: Aplysia californica (California sea hare)
• Total number of polymer chains: 5
• Total formula weight: 134165.01

Authors

Nemecz, A.,Yamauchi, J.G.,Kim, C. (deposition date: 2012-01-16, release date: 2012-03-21, Last modification date: 2024-11-20)

Primary citation

Grimster, N.P.,Stump, B.,Fotsing, J.R.,Weide, T.,Talley, T.T.,Yamauchi, J.G.,Nemecz, A.,Kim, C.,Ho, K.Y.,Sharpless, K.B.,Taylor, P.,Fokin, V.V.
Generation of candidate ligands for nicotinic acetylcholine receptors via in situ click chemistry with a soluble acetylcholine binding protein template.
J.Am.Chem.Soc., 134:6732-6740, 2012

PubMed Abstract: Nicotinic acetylcholine receptors (nAChRs), which are responsible for mediating key physiological functions, are ubiquitous in the central and peripheral nervous systems. As members of the Cys loop ligand-gated ion channel family, neuronal nAChRs are pentameric, composed of various permutations of α (α2 to α10) and β (β2 to β4) subunits forming functional heteromeric or homomeric receptors. Diversity in nAChR subunit composition complicates the development of selective ligands for specific subtypes, since the five binding sites reside at the subunit interfaces. The acetylcholine binding protein (AChBP), a soluble extracellular domain homologue secreted by mollusks, serves as a general structural surrogate for the nAChRs. In this work, homomeric AChBPs from Lymnaea and Aplysia snails were used as in situ templates for the generation of novel and potent ligands that selectively bind to these proteins. The cycloaddition reaction between building-block azides and alkynes to form stable 1,2,3-triazoles was used to generate the leads. The extent of triazole formation on the AChBP template correlated with the affinity of the triazole product for the nicotinic ligand binding site. Instead of the in situ protein-templated azide-alkyne cycloaddition reaction occurring at a localized, sequestered enzyme active center as previously shown, we demonstrate that the in situ reaction can take place at the subunit interfaces of an oligomeric protein and can thus be used as a tool for identifying novel candidate nAChR ligands. The crystal structure of one of the in situ-formed triazole-AChBP complexes shows binding poses and molecular determinants of interactions predicted from structures of known agonists and antagonists. Hence, the click chemistry approach with an in situ template of a receptor provides a novel synthetic avenue for generating candidate agonists and antagonists for ligand-gated ion channels.

PubMed: 22394239
DOI: 10.1021/ja3001858

Experimental method

X-RAY DIFFRACTION (2.3 Å)