4C4Z

Crystal structure of human bifunctional epoxide hydroxylase 2 complexed with A8

4C4Z の概要

• エントリーDOI: 10.2210/pdb4c4z/pdb
• 関連するPDBエントリー: 4C4X 4C4Y
• 分子名称: BIFUNCTIONAL EPOXIDE HYDROLASE 2, 1-ethyl-3-naphthalen-1-ylurea (3 entities in total)
• 機能のキーワード: hydrolase, drug design, multiple binding modes
• 由来する生物種: HOMO SAPIENS (HUMAN)
• 細胞内の位置: Cytoplasm: P34913
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 75170.38

構造登録者

Pilger, J.,Mazur, A.,Monecke, P.,Schreuder, H.,Elshorst, B.,Langer, T.,Schiffer, A.,Krimm, I.,Wegstroth, M.,Lee, D.,Hessler, G.,Wendt, K.-U.,Becker, S.,Griesinger, C. (登録日: 2013-09-09, 公開日: 2014-10-01, 最終更新日: 2024-05-08)

主引用文献

Pilger, J.,Mazur, A.,Monecke, P.,Schreuder, H.,Elshorst, B.,Bartoschek, S.,Langer, T.,Schiffer, A.,Krimm, I.,Wegstroth, M.,Lee, D.,Hessler, G.,Wendt, K.,Becker, S.,Griesinger, C.
A Combination of Spin Diffusion Methods for the Determination of Protein-Ligand Complex Structural Ensembles.
Angew.Chem.Int.Ed.Engl., 54:6511-, 2015

PubMed Abstract: Structure-based drug design (SBDD) is a powerful and widely used approach to optimize affinity of drug candidates. With the recently introduced INPHARMA method, the binding mode of small molecules to their protein target can be characterized even if no spectroscopic information about the protein is known. Here, we show that the combination of the spin-diffusion-based NMR methods INPHARMA, trNOE, and STD results in an accurate scoring function for docking modes and therefore determination of protein-ligand complex structures. Applications are shown on the model system protein kinase A and the drug targets glycogen phosphorylase and soluble epoxide hydrolase (sEH). Multiplexing of several ligands improves the reliability of the scoring function further. The new score allows in the case of sEH detecting two binding modes of the ligand in its binding site, which was corroborated by X-ray analysis.

PubMed: 25877959
DOI: 10.1002/ANIE.201500671

実験手法

X-RAY DIFFRACTION (2.06 Å)