4A7K

Bifunctional Aldos-2-ulose dehydratase

4A7K の概要

• エントリーDOI: 10.2210/pdb4a7k/pdb
• 関連するPDBエントリー: 4A7Y 4A7Z
• 分子名称: ALDOS-2-ULOSE DEHYDRATASE, ZINC ION, MAGNESIUM ION, ... (5 entities in total)
• 機能のキーワード: lyase, dehydratase/isomerase, lignin degradation, cortalcerone/microthecin forming, metalloenzyme
• 由来する生物種: PHANEROCHAETE CHRYSOSPORIUM (WHITE ROT FUNGUS)
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 99533.32

構造登録者

Claesson, M.,Lindqvist, Y.,Madrid, S.,Sandalova, T.,Fiskesund, R.,Yu, S.,Schneider, G. (登録日: 2011-11-14, 公開日: 2012-03-21, 最終更新日: 2024-05-08)

主引用文献

Claesson, M.,Lindqvist, Y.,Madrid, S.,Sandalova, T.,Fiskesund, R.,Yu, S.,Schneider, G.
Crystal Structure of Bifunctional Aldos-2-Ulose Dehydratase/Isomerase from Phanerochaete Chrysosporium with the Reaction Intermediate Ascopyrone M.
J.Mol.Biol., 417:279-, 2012

PubMed Abstract: The enzyme aldos-2-ulose dehydratase/isomerase (AUDH) participates in carbohydrate secondary metabolism, catalyzing the conversion of glucosone and 1,5-d-anhydrofructose to the secondary metabolites cortalcerone and microthecin, respectively. AUDH is a homo-dimeric enzyme with subunits of 900 amino acids. The subunit consists of a seven-bladed β-propeller domain, two cupin folds and a C-terminal lectin domain. AUDH contains a structural Zn(2+) and Mg(2+) located in loop regions and two zinc ions at the bottom of two putative active-site clefts in the propeller and the cupin domain, respectively. Catalysis is dependent on these two zinc ions, as their specific removal led to loss of enzymatic activity. The structure of the Zn(2)(+)-depleted enzyme is very similar to that of native AUDH, and structural changes upon metal removal as the cause for the catalytic deficiencies can be excluded. The complex with the reaction intermediate ascopyrone M shows binding of this compound at two different sites, with direct coordination to Zn(2+) in the propeller domain and as second sphere ligand of the metal ion in the cupin domain. These observations suggest that the two reactions of AUDH might be catalyzed in two different active sites, about 60 Å apart. The dehydration reaction most likely follows an elimination mechanism, where Zn(2+) acts as a Lewis acid polarizing the C2 keto group of 1,5-d-anhydrofructose. Abstraction of the proton at the C3 carbon atom and protonation of the leaving group, the C4 hydroxyl moiety, could potentially be catalyzed by the side chain of the suitably positioned residue His155.

PubMed: 22330145
DOI: 10.1016/J.JMB.2012.02.001

実験手法

X-RAY DIFFRACTION (2 Å)