4A09

Structure of hsDDB1-drDDB2 bound to a 15 bp CPD-duplex (purine at D-1 position) at 3.1 A resolution (CPD 2)

4A09 の概要

• エントリーDOI: 10.2210/pdb4a09/pdb
• 関連するPDBエントリー: 2B5L 2B5M 2B5N 2HYE 3EI1 3EI2 3EI3 3EI4 4A08 4A0A 4A0B 4A0C 4A0K 4A0L 4A11
• 分子名称: DNA DAMAGE-BINDING PROTEIN 1, DNA DAMAGE-BINDING PROTEIN 2, 5'-D(*GP*GP*TP*GP*AP*AP*AP*(TTD)P*AP*GP*CP*AP*GP*GP)-3', ... (6 entities in total)
• 機能のキーワード: dna-binding protein-dna complex, dna damage repair, ddb, dna-binding protein/dna
• 由来する生物種: HOMO SAPIENS (HUMAN); 詳細
• タンパク質・核酸の鎖数: 4
• 化学式量合計: 182214.17

構造登録者

Scrima, A.,Fischer, E.S.,Iwai, S.,Gut, H.,Thoma, N.H. (登録日: 2011-09-08, 公開日: 2011-11-30, 最終更新日: 2023-12-20)

主引用文献

Scrima, A.,Fischer, E.S.,Iwai, S.,Gut, H.,Thoma, N.H.
The Molecular Basis of Crl4(Ddb2/Csa) Ubiquitin Ligase Architecture, Targeting, and Activation
Cell(Cambridge,Mass.), 147:1024-, 2011

PubMed Abstract: The DDB1-CUL4-RBX1 (CRL4) ubiquitin ligase family regulates a diverse set of cellular pathways through dedicated substrate receptors (DCAFs). The DCAF DDB2 detects UV-induced pyrimidine dimers in the genome and facilitates nucleotide excision repair. We provide the molecular basis for DDB2 receptor-mediated cyclobutane pyrimidine dimer recognition in chromatin. The structures of the fully assembled DDB1-DDB2-CUL4A/B-RBX1 (CRL4(DDB2)) ligases reveal that the mobility of the ligase arm creates a defined ubiquitination zone around the damage, which precludes direct ligase activation by DNA lesions. Instead, the COP9 signalosome (CSN) mediates the CRL4(DDB2) inhibition in a CSN5 independent, nonenzymatic, fashion. In turn, CSN inhibition is relieved upon DNA damage binding to the DDB2 module within CSN-CRL4(DDB2). The Cockayne syndrome A DCAF complex crystal structure shows that CRL4(DCAF(WD40)) ligases share common architectural features. Our data support a general mechanism of ligase activation, which is induced by CSN displacement from CRL4(DCAF) on substrate binding to the DCAF.

PubMed: 22118460
DOI: 10.1016/J.CELL.2011.10.035

実験手法

X-RAY DIFFRACTION (3.1 Å)