3UTF

Crystal structure of Aspergillus fumigatus UDP galactopyranose mutase in reduced state

3UTF の概要

• エントリーDOI: 10.2210/pdb3utf/pdb
• 関連するPDBエントリー: 3UTE 3UTG 3UTH
• 分子名称: UDP-galactopyranose mutase, DIHYDROFLAVINE-ADENINE DINUCLEOTIDE, SULFATE ION, ... (4 entities in total)
• 機能のキーワード: nucleotide binding, mutase, flavin adenine dinucleotide binding, isomerase
• 由来する生物種: Aspergillus fumigatus
• タンパク質・核酸の鎖数: 4
• 化学式量合計: 233873.65

構造登録者

Dhatwalia, R.,Singh, H.,Tanner, J.J. (登録日: 2011-11-25, 公開日: 2012-02-08, 最終更新日: 2023-09-13)

主引用文献

Dhatwalia, R.,Singh, H.,Oppenheimer, M.,Karr, D.B.,Nix, J.C.,Sobrado, P.,Tanner, J.J.
Crystal Structures and Small-angle X-ray Scattering Analysis of UDP-galactopyranose Mutase from the Pathogenic Fungus Aspergillus fumigatus.
J.Biol.Chem., 287:9041-9051, 2012

PubMed Abstract: UDP-galactopyranose mutase (UGM) is a flavoenzyme that catalyzes the conversion of UDP-galactopyranose to UDP-galactofuranose, which is a central reaction in galactofuranose biosynthesis. Galactofuranose has never been found in humans but is an essential building block of the cell wall and extracellular matrix of many bacteria, fungi, and protozoa. The importance of UGM for the viability of many pathogens and its absence in humans make UGM a potential drug target. Here we report the first crystal structures and small-angle x-ray scattering data for UGM from the fungus Aspergillus fumigatus, the causative agent of aspergillosis. The structures reveal that Aspergillus UGM has several extra secondary and tertiary structural elements that are not found in bacterial UGMs yet are important for substrate recognition and oligomerization. Small-angle x-ray scattering data show that Aspergillus UGM forms a tetramer in solution, which is unprecedented for UGMs. The binding of UDP or the substrate induces profound conformational changes in the enzyme. Two loops on opposite sides of the active site move toward each other by over 10 Å to cover the substrate and create a closed active site. The degree of substrate-induced conformational change exceeds that of bacterial UGMs and is a direct consequence of the unique quaternary structure of Aspergillus UGM. Galactopyranose binds at the re face of the FAD isoalloxazine with the anomeric carbon atom poised for nucleophilic attack by the FAD N5 atom. The structural data provide new insight into substrate recognition and the catalytic mechanism and thus will aid inhibitor design.

PubMed: 22294687
DOI: 10.1074/jbc.M111.327536

実験手法

X-RAY DIFFRACTION (2.25 Å)