3SXD
Crystal structure of BBBB+UDP+Gal with MPD as the cryoprotectant
Summary for 3SXD
| Entry DOI | 10.2210/pdb3sxd/pdb |
| Related | 3SX3 3SX5 3SX7 3SX8 3SXA 3SXB 3SXC 3SXE 3SXG |
| Descriptor | Histo-blood group ABO system transferase, URIDINE-5'-DIPHOSPHATE, beta-D-galactopyranose, ... (6 entities in total) |
| Functional Keywords | retaining glycosyltransferase, glycoprotein, blood group antigen, abo rossmann fold, metal-binding, manganese, transferase |
| Biological source | Homo sapiens (human) |
| Cellular location | Golgi apparatus, Golgi stack membrane; Single-pass type II membrane protein: P16442 |
| Total number of polymer chains | 1 |
| Total formula weight | 34901.82 |
| Authors | Johal, A.R.,Evans, S.V. (deposition date: 2011-07-14, release date: 2012-02-29, Last modification date: 2023-09-13) |
| Primary citation | Johal, A.R.,Schuman, B.,Alfaro, J.A.,Borisova, S.,Seto, N.O.,Evans, S.V. Sequence-dependent effects of cryoprotectants on the active sites of the human ABO(H) blood group A and B glycosyltransferases. Acta Crystallogr.,Sect.D, 68:268-276, 2012 Cited by PubMed Abstract: The human ABO(H) A and B blood group glycosyltransferases GTA and GTB differ by only four amino acids, yet this small dissimilarity is responsible for significant differences in biosynthesis, kinetics and structure. Like other glycosyltransferases, these two enzymes have been shown to recognize substrates through dramatic conformational changes in mobile polypeptide loops surrounding the active site. Structures of GTA, GTB and several chimeras determined by single-crystal X-ray diffraction demonstrate a range of susceptibility to the choice of cryoprotectant, in which the mobile polypeptide loops can be induced by glycerol to form the ordered closed conformation associated with substrate recognition and by MPD [hexylene glycol, (±)-2-methyl-2,4-pentanediol] to hinder binding of substrate in the active site owing to chelation of the Mn²⁺ cofactor and thereby adopt the disordered open state. Glycerol is often avoided as a cryoprotectant when determining the structures of carbohydrate-active enzymes as it may act as a competitive inhibitor for monosaccharide ligands. Here, it is shown that the use of glycerol as a cryoprotectant can additionally induce significant changes in secondary structure, a phenomenon that could apply to any class of protein. PubMed: 22349229DOI: 10.1107/S0907444912001801 PDB entries with the same primary citation |
| Experimental method | X-RAY DIFFRACTION (1.55 Å) |
Structure validation
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