3SE9

Crystal structure of broadly and potently neutralizing antibody VRC-PG04 in complex with HIV-1 gp120

Summary for 3SE9

Related3NGB
DescriptorHIV-1 Clade AE strain 93TH057 gp120, Heavy chain of antibody VRC-PG04, Light chain of antibody VRC-PG04, ... (10 entities in total)
Functional Keywordshiv, gp120, antibody, vrc-pg04, neutralization, vaccine, envelope glycoprotein, viral protein-immune system complex, viral protein/immune system
Biological sourceHuman immunodeficiency virus 1
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Total number of polymer chains3
Total molecular weight90841.22
Authors
Kwong, P.D.,Zhou, T. (deposition date: 2011-06-10, release date: 2011-08-10, Last modification date: 2011-10-05)
Primary citation
Wu, X.,Zhou, T.,Zhu, J.,Zhang, B.,Georgiev, I.,Wang, C.,Chen, X.,Longo, N.S.,Louder, M.,McKee, K.,O'Dell, S.,Perfetto, S.,Schmidt, S.D.,Shi, W.,Wu, L.,Yang, Y.,Yang, Z.Y.,Yang, Z.,Zhang, Z.,Bonsignori, M.,Crump, J.A.,Kapiga, S.H.,Sam, N.E.,Haynes, B.F.,Simek, M.,Burton, D.R.,Koff, W.C.,Doria-Rose, N.A.,Connors, M.,Mullikin, J.C.,Nabel, G.J.,Roederer, M.,Shapiro, L.,Kwong, P.D.,Mascola, J.R.
Focused evolution of HIV-1 neutralizing antibodies revealed by structures and deep sequencing.
Science, 333:1593-1602, 2011
PubMed: 21835983 (PDB entries with the same primary citation)
DOI: 10.1126/science.1207532
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.22690.1%0.6%4.4%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution