3QYB

X-ray Crystal Structure of Human TBC1D4 (AS160) RabGAP domain

Summary for 3QYB

• Entry DOI: 10.2210/pdb3qyb/pdb
• Related: 3QYE
• Descriptor: TBC1 domain family member 4 (2 entities in total)
• Functional Keywords: rabgap, rab, adipocyte, hydrolase activator
• Biological source: Homo sapiens (human)
• Cellular location: Cytoplasm: O60343
• Total number of polymer chains: 1
• Total formula weight: 35161.82

Authors

Park, S.Y.,Shoelson, S.E. (deposition date: 2011-03-03, release date: 2011-03-23, Last modification date: 2024-02-21)

Primary citation

Park, S.Y.,Jin, W.,Woo, J.R.,Shoelson, S.E.
Crystal structures of human TBC1D1 and TBC1D4 (AS160) RabGTPase-activating protein (RabGAP) domains reveal critical elements for GLUT4 translocation.
J.Biol.Chem., 286:18130-18138, 2011

PubMed Abstract: We have solved the x-ray crystal structures of the RabGAP domains of human TBC1D1 and human TBC1D4 (AS160), at 2.2 and 3.5 Å resolution, respectively. Like the yeast Gyp1p RabGAP domain, whose structure was solved previously in complex with mouse Rab33B, the human TBC1D1 and TBC1D4 domains both have 16 α-helices and no β-sheet elements. We expected the yeast Gyp1p RabGAP/mouse Rab33B structure to predict the corresponding interfaces between cognate mammalian RabGAPs and Rabs, but found that residues were poorly conserved. We further tested the relevance of this model by Ala-scanning mutagenesis, but only one of five substitutions within the inferred binding site of the TBC1D1 RabGAP significantly perturbed catalytic efficiency. In addition, substitution of TBC1D1 residues with corresponding residues from Gyp1p did not enhance catalytic efficiency. We hypothesized that biologically relevant RabGAP/Rab partners utilize additional contacts not described in the yeast Gyp1p/mouse Rab33B structure, which we predicted using our two new human TBC1D1 and TBC1D4 structures. Ala substitution of TBC1D1 Met(930), corresponding to a residue outside of the Gyp1p/Rab33B contact, substantially reduced catalytic activity. GLUT4 translocation assays confirmed the biological relevance of our findings. Substitutions with lowest RabGAP activity, including catalytically dead RK and Met(930) and Leu(1019) predicted to perturb Rab binding, confirmed that biological activity requires contacts between cognate RabGAPs and Rabs beyond those in the yeast Gyp1p RabGAP/mouse Rab33B structure.

PubMed: 21454505
DOI: 10.1074/jbc.M110.217323

Experimental method

X-RAY DIFFRACTION (3.5 Å)