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3PO2

Arrested RNA Polymerase II elongation complex

Summary for 3PO2
Entry DOI10.2210/pdb3po2/pdb
DescriptorDNA-directed RNA polymerase II subunit RPB1, DNA-directed RNA polymerases I, II, and III subunit RPABC5, DNA-directed RNA polymerase II subunit RPB11, ... (20 entities in total)
Functional Keywordsrna polymerase ii, mrna, transcription, arrest, backtracking, cleavage, transferase-dna-rna complex, transferase/dna/rna
Biological sourceSaccharomyces cerevisiae (brewer's yeast,lager beer yeast,yeast)
More
Cellular locationNucleus: P04050 P38902 P08518 P16370 P20433 P20434 P34087 P20436
Nucleus, nucleolus : P22139 P40422 P27999
Cytoplasm : P20435
Total number of polymer chains15
Total formula weight532294.07
Authors
Cheung, A.C.M.,Cramer, P. (deposition date: 2010-11-21, release date: 2011-03-02, Last modification date: 2023-09-06)
Primary citationCheung, A.C.,Cramer, P.
Structural basis of RNA polymerase II backtracking, arrest and reactivation.
Nature, 471:249-253, 2011
Cited by
PubMed Abstract: During gene transcription, RNA polymerase (Pol) II moves forwards along DNA and synthesizes messenger RNA. However, at certain DNA sequences, Pol II moves backwards, and such backtracking can arrest transcription. Arrested Pol II is reactivated by transcription factor IIS (TFIIS), which induces RNA cleavage that is required for cell viability. Pol II arrest and reactivation are involved in transcription through nucleosomes and in promoter-proximal gene regulation. Here we present X-ray structures at 3.3 Å resolution of an arrested Saccharomyces cerevisiae Pol II complex with DNA and RNA, and of a reactivation intermediate that additionally contains TFIIS. In the arrested complex, eight nucleotides of backtracked RNA bind a conserved 'backtrack site' in the Pol II pore and funnel, trapping the active centre trigger loop and inhibiting mRNA elongation. In the reactivation intermediate, TFIIS locks the trigger loop away from backtracked RNA, displaces RNA from the backtrack site, and complements the polymerase active site with a basic and two acidic residues that may catalyse proton transfers during RNA cleavage. The active site is demarcated from the backtrack site by a 'gating tyrosine' residue that probably delimits backtracking. These results establish the structural basis of Pol II backtracking, arrest and reactivation, and provide a framework for analysing gene regulation during transcription elongation.
PubMed: 21346759
DOI: 10.1038/nature09785
PDB entries with the same primary citation
Experimental method
X-RAY DIFFRACTION (3.3 Å)
Structure validation

227561

數據於2024-11-20公開中

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