3O6J

Crystal Structure of 4-Chlorocatechol Dioxygenase from Rhodococcus opacus 1CP in complex with hydroxyquinol

3O6J の概要

• エントリーDOI: 10.2210/pdb3o6j/pdb
• 関連するPDBエントリー: 3O32 3O5U 3O6R
• 分子名称: Chlorocatechol 1,2-dioxygenase, FE (III) ION, (2R)-3-(PHOSPHONOOXY)-2-(TETRADECANOYLOXY)PROPYL PALMITATE, ... (6 entities in total)
• 機能のキーワード: beta barrel, oxidoreductase
• 由来する生物種: RHODOCOCCUS OPACUS (Nocardia opaca)
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 59473.88

構造登録者

Ferraroni, M.,Briganti, F.,Kolomitseva, M.,Golovleva, L. (登録日: 2010-07-29, 公開日: 2011-08-17, 最終更新日: 2024-02-21)

主引用文献

Ferraroni, M.,Kolomytseva, M.,Scozzafava, A.,Golovleva, L.,Briganti, F.
X-ray structures of 4-chlorocatechol 1,2-dioxygenase adducts with substituted catechols: new perspectives in the molecular basis of intradiol ring cleaving dioxygenases specificity.
J. Struct. Biol., 181:274-282, 2013

PubMed Abstract: The crystallographic structures of 4-chlorocatechol 1,2-dioxygenase (4-CCD) complexes with 3,5-dichlorocatechol, protocatechuate (3,4-dihydroxybenzoate), hydroxyquinol (benzen-1,2,4-triol) and pyrogallol (benzen-1,2,3-triol), which act as substrates or inhibitors of the enzyme, have been determined and analyzed. 4-CCD from the Gram-positive bacterium Rhodococcus opacus 1CP is a Fe(III) ion containing enzyme specialized in the aerobic biodegradation of chlorocatechols. The structures of the 4-CCD complexes show that the catechols bind the catalytic iron ion in a bidentate mode displacing Tyr169 and the benzoate ion (found in the native enzyme structure) from the metal coordination sphere, as found in other adducts of intradiol dioxygenases with substrates. The analysis of the present structures allowed to identify the residues selectively involved in recognition of the diverse substrates. Furthermore the structural comparison with the corresponding complexes of catechol 1,2-dioxygenase from the same Rhodococcus strain (Rho-1,2-CTD) highlights significant differences in the binding of the tested catechols to the active site of the enzyme, particularly in the orientation of the aromatic ring substituents. As an example the 3-substituted catechols are bound with the substituent oriented towards the external part of the 4-CCD active site cavity, whereas in the Rho-1,2-CTD complexes the 3-substituents were placed in the internal position. The present crystallographic study shed light on the mechanism that allows substrate recognition inside this class of high specific enzymes involved in the biodegradation of recalcitrant pollutants.

PubMed: 23261399
DOI: 10.1016/j.jsb.2012.11.007

実験手法

X-RAY DIFFRACTION (2.9 Å)