3NWJ

Crystal structure of shikimate kinase from Arabidopsis thaliana (AtSK2)

3NWJ の概要

• エントリーDOI: 10.2210/pdb3nwj/pdb
• 分子名称: AtSK2 (2 entities in total)
• 機能のキーワード: p loop, shikimate, nucleoside monophosphate kinase, shikimate kinase, atp binding, chloroplast, transferase
• 由来する生物種: Arabidopsis thaliana (mouse-ear cress,thale-cress)
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 55317.03

構造登録者

Fucile, G.,Garcia, C.,Petit, P.,Christendat, D. (登録日: 2010-07-09, 公開日: 2011-06-29, 最終更新日: 2023-09-06)

主引用文献

Fucile, G.,Garcia, C.,Carlsson, J.,Sunnerhagen, M.,Christendat, D.
Structural and biochemical investigation of two Arabidopsis shikimate kinases: The heat-inducible isoform is thermostable.
Protein Sci., 20:1125-1136, 2011

PubMed Abstract: The expression of plant shikimate kinase (SK; EC 2.7.1.71), an intermediate step in the shikimate pathway to aromatic amino acid biosynthesis, is induced under specific conditions of environmental stress and developmental requirements in an isoform-specific manner. Despite their important physiological role, experimental structures of plant SKs have not been determined and the biochemical nature of plant SK regulation is unknown. The Arabidopsis thaliana genome encodes two SKs, AtSK1 and AtSK2. We demonstrate that AtSK2 is highly unstable and becomes inactivated at 37 °C whereas the heat-induced isoform, AtSK1, is thermostable and fully active under identical conditions at this temperature. We determined the crystal structure of AtSK2, the first SK structure from the plant kingdom, and conducted biophysical characterizations of both AtSK1 and AtSK2 towards understanding this mechanism of thermal regulation. The crystal structure of AtSK2 is generally conserved with bacterial SKs with the addition of a putative regulatory phosphorylation motif forming part of the adenosine triphosphate binding site. The heat-induced isoform, AtSK1, forms a homodimer in solution, the formation of which facilitates its relative thermostability compared to AtSK2. In silico analyses identified AtSK1 site variants that may contribute to AtSK1 stability. Our findings suggest that AtSK1 performs a unique function under heat stress conditions where AtSK2 could become inactivated. We discuss these findings in the context of regulating metabolic flux to competing downstream pathways through SK-mediated control of steady state concentrations of shikimate.

PubMed: 21520319
DOI: 10.1002/pro.640

実験手法

X-RAY DIFFRACTION (2.35 Å)