3NOT

Light-induced intermediate structure L2 of P. aeruginosa bacteriophytochrome

3NOT の概要

• エントリーDOI: 10.2210/pdb3not/pdb
• 関連するPDBエントリー: 3NHQ 3NOP 3NOU
• 分子名称: Bacteriophytochrome, BILIVERDINE IX ALPHA (2 entities in total)
• 機能のキーワード: intermediate structure, difference fourier method, real space refinement, signaling protein
• 由来する生物種: Pseudomonas Aeruginosa
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 57405.88

構造登録者

Yang, X.,Ren, Z.,Moffat, K. (登録日: 2010-06-25, 公開日: 2012-11-28, 最終更新日: 2024-11-20)

主引用文献

Yang, X.,Ren, Z.,Kuk, J.,Moffat, K.
Temperature-scan cryocrystallography reveals reaction intermediates in bacteriophytochrome.
Nature, 479:428-432, 2011

PubMed Abstract: Light is a fundamental signal that regulates important physiological processes such as development and circadian rhythm in living organisms. Phytochromes form a major family of photoreceptors responsible for red light perception in plants, fungi and bacteria. They undergo reversible photoconversion between red-absorbing (Pr) and far-red-absorbing (Pfr) states, thereby ultimately converting a light signal into a distinct biological signal that mediates subsequent cellular responses. Several structures of microbial phytochromes have been determined in their dark-adapted Pr or Pfr states. However, the structural nature of initial photochemical events has not been characterized by crystallography. Here we report the crystal structures of three intermediates in the photoreaction of Pseudomonas aeruginosa bacteriophytochrome (PaBphP). We used cryotrapping crystallography to capture intermediates, and followed structural changes by scanning the temperature at which the photoreaction proceeded. Light-induced conformational changes in PaBphP originate in ring D of the biliverdin (BV) chromophore, and E-to-Z isomerization about the C(15) = C(16) double bond between rings C and D is the initial photochemical event. As the chromophore relaxes, the twist of the C(15) methine bridge about its two dihedral angles is reversed. Structural changes extend further to rings B and A, and to the surrounding protein regions. These data indicate that absorption of a photon by the Pfr state of PaBphP converts a light signal into a structural signal via twisting and untwisting of the methine bridges in the linear tetrapyrrole within the confined protein cavity.

PubMed: 22002602
DOI: 10.1038/nature10506

実験手法

X-RAY DIFFRACTION (2.7 Å)