3NLA

NMR STRUCTURE OF THE N-TERMINAL DOMAIN WITH A LINKER PORTION OF ANTARCTIC EEL POUT ANTIFREEZE PROTEIN RD3, 40 STRUCTURES

3NLA の概要

• エントリーDOI: 10.2210/pdb3nla/pdb
• NMR情報: BMRB: 4199
• 分子名称: ANTIFREEZE PROTEIN RD3 TYPE III (1 entity in total)
• 機能のキーワード: antifreeze protein, thermal hysteresis protein, ice binding protein, antifreeze
• 由来する生物種: Lycodichthys dearborni (Antarctic eel pout)
• 細胞内の位置: Secreted: P35753
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 7885.33

構造登録者

Miura, K.,Ohgiya, S.,Hoshino, T.,Nemoto, N.,Hikichi, K.,Tsuda, S. (登録日: 1998-02-24, 公開日: 1999-02-23, 最終更新日: 2024-05-22)

主引用文献

Jia, Z.,DeLuca, C.I.,Chao, H.,Davies, P.L.
Structural basis for the binding of a globular antifreeze protein to ice.
Nature, 384:285-288, 1996

PubMed Abstract: Antifreeze proteins (AFPs) have the unique ability to adsorb to ice and inhibit its growth. Many organisms ranging from fish to bacteria use AFPs to retard freezing or lessen the damage incurred upon freezing and thawing. The ice-binding mechanism of the long linear alpha-helical type I AFPs has been attributed to their regularly spaced polar residues matching the ice lattice along a pyramidal plane. In contrast, it is not known how globular antifreeze proteins such as type III AFP that lack repeating ice-binding residues bind to ice. Here we report the 1.25 A crystal structure of recombinant type III AFP (QAE isoform) from eel pout (Macrozoarces americanus), which reveals a remarkably flat amphipathic ice-binding site where five hydrogen-bonding atoms match two ranks of oxygens on the [1010] ice prism plane in the <0001> direction, giving high ice-binding affinity and specificity. This binding site, substantiated by the structures and properties of several ice-binding site mutants, suggests that the AFP occupies a niche in the ice surface in which it covers the basal plane while binding to the prism face.

PubMed: 8918883
DOI: 10.1038/384285a0

実験手法

SOLUTION NMR