3N35

Erythrina corallodendron lectin mutant (Y106G) with N-Acetylgalactosamine

Summary for 3N35

• Entry DOI: 10.2210/pdb3n35/pdb
• Related: 1AX0 1AX1 1FYU 1SFY 3N36 3N3H
• Descriptor: Lectin, MANGANESE (II) ION, CALCIUM ION, ... (5 entities in total)
• Functional Keywords: legume lectin, glycosylation, erythrina lectin, sugar, recombinant lectin, sugar binding protein
• Biological source: Erythrina corallodendron (coral tree)
• Total number of polymer chains: 1
• Total formula weight: 26808.59

Authors

Thamotharan, S.,Karthikeyan, T.,Kulkarni, K.A.,Shetty, K.N.,Surolia, A.,Vijayan, M.,Suguna, K. (deposition date: 2010-05-19, release date: 2011-03-30, Last modification date: 2023-11-01)

Primary citation

Thamotharan, S.,Karthikeyan, T.,Kulkarni, K.A.,Shetty, K.N.,Surolia, A.,Vijayan, M.,Suguna, K.
Modification of the sugar specificity of a plant lectin: structural studies on a point mutant of Erythrina corallodendron lectin.
Acta Crystallogr.,Sect.D, 67:218-227, 2011

PubMed Abstract: A mutant of Erythrina corallodendron lectin was generated with the aim of enhancing its affinity for N-acetylgalactosamine. A tyrosine residue close to the binding site of the lectin was mutated to a glycine in order to facilitate stronger interactions between the acetamido group of the sugar and the lectin which were prevented by the side chain of the tyrosine in the wild-type lectin. The crystal structures of this Y106G mutant lectin in complex with galactose and N-acetylgalactosamine have been determined. A structural rationale has been provided for the differences in the relative binding affinities of the wild-type and mutant lectins towards the two sugars based on the structures. A hydrogen bond between the O6 atom of the sugars and the variable loop of the carbohydrate-binding site of the lectin is lost in the mutant complexes owing to a conformational change in the loop. This loss is compensated by an additional hydrogen bond that is formed between the acetamido group of the sugar and the mutant lectin in the complex with N-acetylgalactosamine, resulting in a higher affinity of the mutant lectin for N-acetylgalactosamine compared with that for galactose, in contrast to the almost equal affinity of the wild-type lectin for the two sugars. The structure of a complex of the mutant with a citrate ion bound at the carbohydrate-binding site that was obtained while attempting to crystallize the complexes with sugars is also presented.

PubMed: 21358053
DOI: 10.1107/S0907444911004525

Experimental method

X-RAY DIFFRACTION (2 Å)