3N2K

TUBULIN-NSC 613862: RB3 Stathmin-like domain complex

3N2K の概要

• エントリーDOI: 10.2210/pdb3n2k/pdb
• 関連するPDBエントリー: 3N2G
• 分子名称: Tubulin alpha chain, Tubulin beta chain, Stathmin-4, ... (7 entities in total)
• 機能のキーワード: alpha-tubulin, beta-tubulin, colchicine domain, covalent binding, microtubule, stathmin, tubulin, cell cycle
• 由来する生物種: RATTUS NORVEGICUS (rat); 詳細
• タンパク質・核酸の鎖数: 5
• 化学式量合計: 219685.85

構造登録者

Barbier, P.,Dorleans, A.,Devred, F.,Sanz, L.,Allegro, D.,Alfonso, C.,Knossow, M.,Peyrot, V.,Andreu, J.M. (登録日: 2010-05-18, 公開日: 2010-07-28, 最終更新日: 2023-09-06)

主引用文献

Barbier, P.,Dorleans, A.,Devred, F.,Sanz, L.,Allegro, D.,Alfonso, C.,Knossow, M.,Peyrot, V.,Andreu, J.M.
Stathmin and interfacial microtubule inhibitors recognize a naturally curved conformation of tubulin dimers.
J.Biol.Chem., 285:31672-31681, 2010

PubMed Abstract: Tubulin is able to switch between a straight microtubule-like structure and a curved structure in complex with the stathmin-like domain of the RB3 protein (T(2)RB3). GTP hydrolysis following microtubule assembly induces protofilament curvature and disassembly. The conformation of the labile tubulin heterodimers is unknown. One important question is whether free GDP-tubulin dimers are straightened by GTP binding or if GTP-tubulin is also curved and switches into a straight conformation upon assembly. We have obtained insight into the bending flexibility of tubulin by analyzing the interplay of tubulin-stathmin association with the binding of several small molecule inhibitors to the colchicine domain at the tubulin intradimer interface, combining structural and biochemical approaches. The crystal structures of T(2)RB3 complexes with the chiral R and S isomers of ethyl-5-amino-2-methyl-1,2-dihydro-3-phenylpyrido[3,4-b]pyrazin-7-yl-carbamate, show that their binding site overlaps with colchicine ring A and that both complexes have the same curvature as unliganded T(2)RB3. The binding of these ligands is incompatible with a straight tubulin structure in microtubules. Analytical ultracentrifugation and binding measurements show that tubulin-stathmin associations (T(2)RB3, T(2)Stath) and binding of ligands (R, S, TN-16, or the colchicine analogue MTC) are thermodynamically independent from one another, irrespective of tubulin being bound to GTP or GDP. The fact that the interfacial ligands bind equally well to tubulin dimers or stathmin complexes supports a bent conformation of the free tubulin dimers. It is tempting to speculate that stathmin evolved to recognize curved structures in unassembled and disassembling tubulin, thus regulating microtubule assembly.

PubMed: 20675373
DOI: 10.1074/jbc.M110.141929

実験手法

X-RAY DIFFRACTION (4 Å)