3N14

XenA - W358A

3N14 の概要

• エントリーDOI: 10.2210/pdb3n14/pdb
• 関連するPDBエントリー: 3L5L 3N16 3N19
• 分子名称: Xenobiotic reductase A, FLAVIN MONONUCLEOTIDE, SULFATE ION, ... (5 entities in total)
• 機能のキーワード: flavin, oxidoreductase, fmn, quinoline
• 由来する生物種: Pseudomonas putida
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 40921.73

構造登録者

Dobbek, H.,Spiegelhauer, O. (登録日: 2010-05-15, 公開日: 2010-09-22, 最終更新日: 2023-11-01)

主引用文献

Spiegelhauer, O.,Werther, T.,Mende, S.,Knauer, S.H.,Dobbek, H.
Determinants of substrate binding and protonation in the flavoenzyme xenobiotic reductase A
J.Mol.Biol., 403:286-298, 2010

PubMed Abstract: Xenobiotic reductase A (XenA) from Pseudomonas putida 86 catalyzes the NAD(P)H-dependent reduction of various α,β-unsaturated carbonyl compounds and is a member of the old yellow enzyme family. The reaction of XenA follows a ping-pong mechanism, implying that its active site has to accommodate and correctly position the various substrates to be oxidized (NADH/NADPH) and to be reduced (different α,β-unsaturated carbonyl compounds) to enable formal hydride transfers between the substrate and the isoalloxazine ring. The active site of XenA is lined by two tyrosine (Tyr27, Tyr183) and two tryptophan (Trp302, Trp358) residues, which were proposed to contribute to substrate binding. We analyzed the individual contributions of the four residues, using site-directed mutagenesis, steady-state and transient kinetics, redox potentiometry and crystal structure analysis. The Y183F substitution decreases the affinity of XenA for NADPH and reduces the rate of the oxidative half-reaction by two to three orders of magnitude, the latter being in agreement with its function as a proton donor in the oxidative half-reaction. Upon reduction of the flavin, Trp302 swings into the active site of XenA (in-conformation) and decreases the extent of the substrate-binding pocket. Its exchange against alanine induces substrate inhibition at elevated NADPH concentrations, indicating that the in-conformation of Trp302 helps to disfavor the nonproductive NADPH binding in the reduced state of XenA. Our analysis shows that while the principal catalytic mechanism of XenA, for example, type of proton donor, is analogous to that of other members of the old yellow enzyme family, its strategy to correctly position and accommodate different substrates is unprecedented.

PubMed: 20826164
DOI: 10.1016/j.jmb.2010.08.047

実験手法

X-RAY DIFFRACTION (1.9 Å)