3M6D

The crystal structure of the d307a mutant of glycoside Hydrolase (family 31) from ruminococcus obeum atcc 29174

Summary for 3M6D

• Entry DOI: 10.2210/pdb3m6d/pdb
• Related: 3FFJ 3M46
• Descriptor: Uncharacterized protein (1 entity in total)
• Functional Keywords: structural genomics, psi-2, protein structure initiative, mcsg, midwest center for structural genomics, hydrolase
• Biological source: Ruminococcus obeum
• Total number of polymer chains: 2
• Total formula weight: 154810.91

Authors

Tan, K.,Tesar, C.,Freeman, L.,Babnigg, G.,Joachimiak, A.,Midwest Center for Structural Genomics (MCSG) (deposition date: 2010-03-15, release date: 2010-04-21, Last modification date: 2023-09-06)

Primary citation

Tan, K.,Tesar, C.,Wilton, R.,Keigher, L.,Babnigg, G.,Joachimiak, A.
Novel alpha-glucosidase from human gut microbiome: substrate specificities and their switch.
Faseb J., 24:3939-3949, 2010

PubMed Abstract: The human intestine harbors a large number of microbes forming a complex microbial community that greatly affects the physiology and pathology of the host. In the human gut microbiome, the enrichment in certain protein gene families appears to be widespread. They include enzymes involved in carbohydrate metabolism such as glucoside hydrolases of dietary polysaccharides and glycoconjugates. We report the crystal structures (wild type, 2 mutants, and a mutant/substrate complex) and the enzymatic activity of a recombinant α-glucosidase from human gut bacterium Ruminococcus obeum. The first ever protein structures from this bacterium reveal a structural homologue to human intestinal maltase-glucoamylase with a highly conserved catalytic domain and reduced auxiliary domains. The α-glucosidase, a member of GH31 family, shows substrate preference for α(1-6) over α(1-4) glycosidic linkages and produces glucose from isomaltose as well as maltose. The preference can be switched by a single mutation at its active site, suggestive of widespread adaptation to utilization of a variety of polysaccharides by intestinal micro-organisms as energy resources.

PubMed: 20581222
DOI: 10.1096/fj.10-156257

Experimental method

X-RAY DIFFRACTION (2.9 Å)