3KKN

Crystal structure of H-Ras T35S in complex with GppNHp

3KKN の概要

• エントリーDOI: 10.2210/pdb3kkn/pdb
• 関連するPDBエントリー: 1X1R 1X1S 3KKM 3KKO 3KKP 3KKQ
• 分子名称: GTPase HRas, PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER, MAGNESIUM ION, ... (4 entities in total)
• 機能のキーワード: gtp-binding, gtpase, signaling protein
• 由来する生物種: Homo sapiens (human)
• 細胞内の位置: Cell membrane. Isoform 2: Nucleus: P01112
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 19934.21

構造登録者

Muraoka, S.,Shima, F.,Liao, J.,Ijiri, Y.,Matsumoto, K.,Ye, M.,Inoue, T.,Kataoka, T. (登録日: 2009-11-06, 公開日: 2010-06-16, 最終更新日: 2023-11-01)

主引用文献

Shima, F.,Ijiri, Y.,Muraoka, S.,Liao, J.,Ye, M.,Araki, M.,Matsumoto, K.,Yamamoto, N.,Sugimoto, T.,Yoshikawa, Y.,Kumasaka, T.,Yamamoto, M.,Tamura, A.,Kataoka, T.
Structural basis for conformational dynamics of GTP-bound Ras protein
J.Biol.Chem., 285:22696-22705, 2010

PubMed Abstract: Ras family small GTPases assume two interconverting conformations, "inactive" state 1 and "active" state 2, in their GTP-bound forms. Here, to clarify the mechanism of state transition, we have carried out x-ray crystal structure analyses of a series of mutant H-Ras and M-Ras in complex with guanosine 5'-(beta,gamma-imido)triphosphate (GppNHp), representing various intermediate states of the transition. Crystallization of H-RasT35S-GppNHp enables us to solve the first complete tertiary structure of H-Ras state 1 possessing two surface pockets unseen in the state 2 or H-Ras-GDP structure. Moreover, determination of the two distinct crystal structures of H-RasT35S-GppNHp, showing prominent polysterism in the switch I and switch II regions, reveals a pivotal role of the guanine nucleotide-mediated interaction between the two switch regions and its rearrangement by a nucleotide positional change in the state 2 to state 1 transition. Furthermore, the (31)P NMR spectra and crystal structures of the GppNHp-bound forms of M-Ras mutants, carrying various H-Ras-type amino acid substitutions, also reveal the existence of a surface pocket in state 1 and support a similar mechanism based on the nucleotide-mediated interaction and its rearrangement in the state 1 to state 2 transition. Intriguingly, the conformational changes accompanying the state transition mimic those that occurred upon GDP/GTP exchange, indicating a common mechanistic basis inherent in the high flexibility of the switch regions. Collectively, these results clarify the structural features distinguishing the two states and provide new insights into the molecular basis for the state transition of Ras protein.

PubMed: 20479006
DOI: 10.1074/jbc.M110.125161

実験手法

X-RAY DIFFRACTION (2.09 Å)