Structure of HIV-1 capsid protein by cryo-EM

Summary for 3J4F

Related3J34 3J3Y 3J3Q
EMDB information5582
Descriptorcapsid protein (1 entity in total)
Functional Keywordshiv-1 capsid, core, all-atom model, mdff, tubular assembly, hexamer, viral protein
Biological sourceHuman immunodeficiency virus 1 (HIV-1)
Total number of polymer chains6
Total molecular weight154214.94
Zhao, G.,Perilla, J.R.,Meng, X.,Schulten, K.,Zhang, P. (deposition date: 2013-07-11, release date: 2013-07-24, Last modification date: 2018-07-18)
Primary citation
Zhao, G.,Perilla, J.R.,Yufenyuy, E.L.,Meng, X.,Chen, B.,Ning, J.,Ahn, J.,Gronenborn, A.M.,Schulten, K.,Aiken, C.,Zhang, P.
Mature HIV-1 capsid structure by cryo-electron microscopy and all-atom molecular dynamics.
Nature, 497:643-646, 2013
PubMed: 23719463 (PDB entries with the same primary citation)
DOI: 10.1038/nature12162
MImport into Mendeley
Experimental method

Structure validation

ClashscoreRamachandran outliersSidechain outliers01.6%1.0%MetricValuePercentile RanksWorseBetterPercentile relative to all structuresPercentile relative to all EM structures