3ICR

Crystal structure of oxidized Bacillus anthracis CoADR-RHD

Summary for 3ICR

• Entry DOI: 10.2210/pdb3icr/pdb
• Related: 3ICS 3ICT
• Descriptor: Coenzyme A-Disulfide Reductase, FLAVIN-ADENINE DINUCLEOTIDE, COENZYME A, ... (4 entities in total)
• Functional Keywords: pyridine nucleotide-disulfide oxidoreductase class i, rhodanese, coenzyme a, flavin adenine dinucleotide, oxidoreductase
• Biological source: Bacillus anthracis
• Total number of polymer chains: 2
• Total formula weight: 135122.79

Authors

Wallen, J.R.,Claiborne, A. (deposition date: 2009-07-18, release date: 2009-11-17, Last modification date: 2024-10-16)

Primary citation

Wallen, J.R.,Mallett, T.C.,Boles, W.,Parsonage, D.,Furdui, C.M.,Karplus, P.A.,Claiborne, A.
Crystal structure and catalytic properties of Bacillus anthracis CoADR-RHD: implications for flavin-linked sulfur trafficking.
Biochemistry, 48:9650-9667, 2009

PubMed Abstract: Rhodanese homology domains (RHDs) play important roles in sulfur trafficking mechanisms essential to the biosynthesis of sulfur-containing cofactors and nucleosides. We have now determined the crystal structure at 2.10 A resolution for the Bacillus anthracis coenzyme A-disulfide reductase isoform (BaCoADR-RHD) containing a C-terminal RHD domain; this is the first structural representative of the multidomain proteins class of the rhodanese superfamily. The catalytic Cys44 of the CoADR module is separated by 25 A from the active-site Cys514' of the RHD domain from the complementary subunit. In stark contrast to the B. anthracis CoADR [Wallen, J. R., Paige, C., Mallett, T. C., Karplus, P. A., and Claiborne, A. (2008) Biochemistry 47, 5182-5193], the BaCoADR-RHD isoform does not catalyze the reduction of coenzyme A-disulfide, although both enzymes conserve the Cys-SSCoA redox center. NADH titrations have been combined with a synchrotron reduction protocol for examination of the structural and redox behavior of the Cys44-SSCoA center. The synchrotron-reduced (Cys44 + CoASH) structure reveals ordered binding for the adenosine 3'-phosphate 5'-pyrophosphate moiety of CoASH, but the absence of density for the pantetheine arm indicates that it is flexible within the reduced active site. Steady-state kinetic analyses with the alternate disulfide substrates methyl methanethiolsulfonate (MMTS) and 5,5'-dithiobis(2-nitrobenzoate) (DTNB), including the appropriate Cys --> Ser mutants, demonstrate that MMTS reduction occurs within the CoADR active site. NADH-dependent DTNB reduction, on the other hand, requires communication between Cys44 and Cys514', and we propose that reduction of the Cys44-SSCoA disulfide promotes the transfer of reducing equivalents to the RHD, with the swinging pantetheine arm serving as a ca. 20 A bridge.

PubMed: 19725515
DOI: 10.1021/bi900887k

Experimental method

X-RAY DIFFRACTION (2.1 Å)