3GP8

Crystal structure of the binary complex of RecD2 with DNA

3GP8 の概要

• エントリーDOI: 10.2210/pdb3gp8/pdb
• 関連するPDBエントリー: 3E1S 3GPL
• 分子名称: Exodeoxyribonuclease V, subunit RecD, putative, 5'-D(*TP*TP*TP*TP*TP*T*TP*TP*TP*TP*TP*TP*TP*T)-3' (3 entities in total)
• 機能のキーワード: alpha and beta protein, atp-binding, nucleotide-binding, helicase, hydrolase-dna complex, hydrolase/dna
• 由来する生物種: Deinococcus radiodurans R1; 詳細
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 65679.66

構造登録者

Saikrishnan, K.,Cook, N.,Wigley, D.B. (登録日: 2009-03-23, 公開日: 2009-06-16, 最終更新日: 2023-09-06)

主引用文献

Saikrishnan, K.,Powell, B.,Cook, N.J.,Webb, M.R.,Wigley, D.B.
Mechanistic basis of 5'-3' translocation in SF1B helicases.
Cell(Cambridge,Mass.), 137:849-859, 2009

PubMed Abstract: Superfamily 1B (SF1B) helicases translocate in a 5'-3' direction and are required for a range of cellular activities across all domains of life. However, structural analyses to date have focused on how SF1A helicases achieve 3'-5' movement along nucleic acids. We present crystal structures of the complex between the SF1B helicase RecD2 from Deinococcus radiodurans and ssDNA in the presence and absence of an ATP analog. These snapshots of the reaction pathway reveal a nucleotide binding-induced conformational change of the two motor domains that is broadly reminiscent of changes observed in other SF1 and SF2 helicases. Together with biochemical data, the structures point to a step size for translocation of one base per ATP hydrolyzed. Moreover, the structures also reveal a mechanism for nucleic acid translocation in the 5'-3' direction by SF1B helicases that is surprisingly different from that of 3'-5' translocation by SF1A enzymes, and explains the molecular basis of directionality.

PubMed: 19490894
DOI: 10.1016/j.cell.2009.03.036

実験手法

X-RAY DIFFRACTION (2.5 Å)