3GKJ

NPC1D(NTD):25hydroxycholesterol

Summary for 3GKJ

• Entry DOI: 10.2210/pdb3gkj/pdb
• Related: 3GKH 3GKI
• Descriptor: Niemann-Pick C1 protein, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, ... (5 entities in total)
• Functional Keywords: oxysterol, cholesterol, cholesterol transfer, disease mutation, endosome, glycoprotein, lysosome, membrane, transmembrane, transport protein
• Biological source: Homo sapiens (human)
• Cellular location: Late endosome membrane; Multi-pass membrane protein: O15118
• Total number of polymer chains: 1
• Total formula weight: 26787.20

Authors

Kwon, H.J. (deposition date: 2009-03-10, release date: 2009-07-14, Last modification date: 2021-10-20)

Primary citation

Kwon, H.J.,Abi-Mosleh, L.,Wang, M.L.,Deisenhofer, J.,Goldstein, J.L.,Brown, M.S.,Infante, R.E.
Structure of N-terminal domain of NPC1 reveals distinct subdomains for binding and transfer of cholesterol.
Cell(Cambridge,Mass.), 137:1213-1224, 2009

PubMed Abstract: LDL delivers cholesterol to lysosomes by receptor-mediated endocytosis. Exit of cholesterol from lysosomes requires two proteins, membrane-bound Niemann-Pick C1 (NPC1) and soluble NPC2. NPC2 binds cholesterol with its isooctyl side chain buried and its 3beta-hydroxyl exposed. Here, we describe high-resolution structures of the N-terminal domain (NTD) of NPC1 and complexes with cholesterol and 25-hydroxycholesterol. NPC1(NTD) binds cholesterol in an orientation opposite to NPC2: 3beta-hydroxyl buried and isooctyl side chain exposed. Cholesterol transfer from NPC2 to NPC1(NTD) requires reorientation of a helical subdomain in NPC1(NTD), enlarging the opening for cholesterol entry. NPC1 with point mutations in this subdomain (distinct from the binding subdomain) cannot accept cholesterol from NPC2 and cannot restore cholesterol exit from lysosomes in NPC1-deficient cells. We propose a working model wherein after lysosomal hydrolysis of LDL-cholesteryl esters, cholesterol binds NPC2, which transfers it to NPC1(NTD), reversing its orientation and allowing insertion of its isooctyl side chain into the outer lysosomal membranes.

PubMed: 19563754
DOI: 10.1016/j.cell.2009.03.049

Experimental method

X-RAY DIFFRACTION (1.6 Å)