3DKN

Sec61 in the Canine ribosome-channel complex from the endoplasmic reticulum

Summary for 3DKN

EMDB information1528
DescriptorRNA (5'-R(P*CP*GP*UP*GP*CP*CP*AP*AP*GP*CP*UP*GP*CP*GP*AP*UP*AP*AP*GP*C)-3'), RNA (5'-R(P*AP*GP*CP*CP*GP*CP*AP*CP*GP*GP*AP*GP*GP*CP*GP*AP*A)-3'), RNA (32-MER), ... (6 entities in total)
Functional Keywordsribosome-channel complex, co-translational translocation, endoplasmic reticulum, protein transport-rna complex, protein transport/rna
Biological sourceCanis lupus familiaris
Total number of polymer chains6
Total molecular weight80071.6
Authors
Menetret, J.-F.,Akey, C. (deposition date: 2008-06-25, release date: 2008-08-19, Last modification date: 2018-07-18)
Primary citation
Menetret, J.F.,Hegde, R.S.,Aguiar, M.,Gygi, S.P.,Park, E.,Rapoport, T.A.,Akey, C.W.
Single copies of Sec61 and TRAP associate with a nontranslating mammalian ribosome.
Structure, 16:1126-1137, 2008
PubMed: 18611385 (PDB entries with the same primary citation)
DOI: 10.1016/j.str.2008.05.003
MImport into Mendeley
Experimental method
ELECTRON MICROSCOPY
?

Structure validation

ClashscoreRamachandran outliersSidechain outliersRNA backbone9415.7%6.9%0.64MetricValuePercentile RanksWorseBetterPercentile relative to all structuresPercentile relative to all EM structures

More Asymmetric unit images

Molmil generated image of 3dkn
no rotation
Molmil generated image of 3dkn
rotated about x axis by 90°
Molmil generated image of 3dkn
rotated about y axis by 90°