3DHA

An Ultral High Resolution Structure of N-Acyl Homoserine Lactone Hydrolase with the Product N-Hexanoyl-L-Homoserine Bound at An Alternative Site

3DHA の概要

• エントリーDOI: 10.2210/pdb3dha/pdb
• 関連するPDBエントリー: 2A7M 2R2D 3DHB 3DHC
• 分子名称: N-Acyl Homoserine Lactone Hydrolase, ZINC ION, N-hexanoyl-L-homoserine, ... (5 entities in total)
• 機能のキーワード: zinc bimetallohydrolase, quorum quenching, n-acyl homoserine lactone, alternative binding site, product complex, ahl lactonase, hydrolase
• 由来する生物種: Bacillus thuringiensis serovar kurstaki
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 29381.10

構造登録者

Liu, D.,Momb, J.,Thomas, P.W.,Moulin, A.,Petsko, G.A.,Fast, W.,Ringe, D. (登録日: 2008-06-17, 公開日: 2008-07-29, 最終更新日: 2023-08-30)

主引用文献

Liu, D.,Momb, J.,Thomas, P.W.,Moulin, A.,Petsko, G.A.,Fast, W.,Ringe, D.
Mechanism of the quorum-quenching lactonase (AiiA) from Bacillus thuringiensis. 1. Product-bound structures.
Biochemistry, 47:7706-7714, 2008

PubMed Abstract: Enzymes capable of hydrolyzing N-acyl- l-homoserine lactones (AHLs) used in some bacterial quorum-sensing pathways are of considerable interest for their ability to block undesirable phenotypes. Most known AHL hydrolases that catalyze ring opening (AHL lactonases) are members of the metallo-beta-lactamase enzyme superfamily and rely on a dinuclear zinc site for catalysis and stability. Here we report the three-dimensional structures of three product complexes formed with the AHL lactonase from Bacillus thuringiensis. Structures of the lactonase bound with two different concentrations of the ring-opened product of N-hexanoyl- l-homoserine lactone are determined at 0.95 and 1.4 A resolution and exhibit different product configurations. A structure of the ring-opened product of the non-natural N-hexanoyl- l-homocysteine thiolactone at 1.3 A resolution is also determined. On the basis of these product-bound structures, a substrate-binding model is presented that differs from previous proposals. Additionally, the proximity of the product to active-site residues and observed changes in protein conformation and metal coordination provide insight into the catalytic mechanism of this quorum-quenching metalloenzyme.

PubMed: 18627129
DOI: 10.1021/bi800368y

実験手法

X-RAY DIFFRACTION (0.95 Å)