3CQD

Structure of the tetrameric inhibited form of phosphofructokinase-2 from Escherichia coli

3CQD の概要

• エントリーDOI: 10.2210/pdb3cqd/pdb
• 分子名称: 6-phosphofructokinase isozyme 2, MAGNESIUM ION, ADENOSINE-5'-TRIPHOSPHATE, ... (4 entities in total)
• 機能のキーワード: phosphofructokinases, pfk-2, escherichia coli, glycolysis, transferase
• 由来する生物種: Escherichia coli
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 67099.74

構造登録者

Ambrosio, A.L.,Cabrera, R.,Caniuguir, A.,Garratt, R.C.,Babul, J. (登録日: 2008-04-02, 公開日: 2008-09-16, 最終更新日: 2023-08-30)

主引用文献

Cabrera, R.,Ambrosio, A.L.,Garratt, R.C.,Guixe, V.,Babul, J.
Crystallographic structure of phosphofructokinase-2 from Escherichia coli in complex with two ATP molecules. Implications for substrate inhibition.
J.Mol.Biol., 383:588-602, 2008

PubMed Abstract: Phosphofructokinase-1 and -2 (Pfk-1 and Pfk-2, respectively) from Escherichia coli belong to different homologous superfamilies. However, in spite of the lack of a common ancestor, they share the ability to catalyze the same reaction and are inhibited by the substrate MgATP. Pfk-2, an ATP-dependent 6-phosphofructokinase member of the ribokinase-like superfamily, is a homodimer of 66 kDa subunits whose oligomerization state is necessary for catalysis and stability. The presence of MgATP favors the tetrameric form of the enzyme. In this work, we describe the structure of Pfk-2 in its inhibited tetrameric form, with each subunit bound to two ATP molecules and two Mg ions. The present structure indicates that substrate inhibition occurs due to the sequential binding of two MgATP molecules per subunit, the first at the usual site occupied by the nucleotide in homologous enzymes and the second at the allosteric site, making a number of direct and Mg-mediated interactions with the first. Two configurations are observed for the second MgATP, one of which involves interactions with Tyr23 from the adjacent subunit in the dimer and the other making an unusual non-Watson-Crick base pairing with the adenine in the substrate ATP. The oligomeric state observed in the crystal is tetrameric, and some of the structural elements involved in the binding of the substrate and allosteric ATPs are also participating in the dimer-dimer interface. This structure also provides the grounds to compare analogous features of the nonhomologous phosphofructokinases from E. coli.

PubMed: 18762190
DOI: 10.1016/j.jmb.2008.08.029

実験手法

X-RAY DIFFRACTION (1.98 Å)