3A9C

Crystal structure of ribose-1,5-bisphosphate isomerase from Thermococcus kodakaraensis KOD1 in complex with ribulose-1,5-bisphosphate

Summary for 3A9C

Related3A11
DescriptorTranslation initiation factor eIF-2B, delta subunit, RIBULOSE-1,5-DIPHOSPHATE, DI(HYDROXYETHYL)ETHER, ... (5 entities in total)
Functional Keywordsisomerase, hexamer, rossmann fold, complex, amp metabolism, initiation factor
Biological sourceThermococcus kodakarensis (Thermococcus kodakaraensis)
Total number of polymer chains6
Total molecular weight233055.79
Authors
Nakamura, A.,Fujihashi, M.,Nishiba, Y.,Yoshida, S.,Yano, A.,Atomi, H.,Imanaka, T.,Miki, K. (deposition date: 2009-10-22, release date: 2010-11-03, Last modification date: 2013-06-12)
Primary citation
Nakamura, A.,Fujihashi, M.,Aono, R.,Sato, T.,Nishiba, Y.,Yoshida, S.,Yano, A.,Atomi, H.,Imanaka, T.,Miki, K.
Dynamic, ligand-dependent conformational change triggers reaction of ribose-1,5-bisphosphate isomerase from Thermococcus kodakarensis KOD1
J.Biol.Chem., 287:20784-20796, 2012
PubMed: 22511789 (PDB entries with the same primary citation)
DOI: 10.1074/jbc.M112.349423
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2.6 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers0.255210.4%5.6%3.3%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 3a9c
no rotation
Molmil generated image of 3a9c
rotated about x axis by 90°
Molmil generated image of 3a9c
rotated about y axis by 90°