2YP2

Haemagglutinin of 2004 Human H3N2 Virus

Summary for 2YP2

• Entry DOI: 10.2210/pdb2yp2/pdb
• Related: 2YP3 2YP4 2YP5 2YP7 2YP8 2YP9 2YPG
• Descriptor: HEMAGGLUTININ, alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ... (7 entities in total)
• Functional Keywords: viral protein, receptor binding, membrane fusion, influenza virus evolution, glycoprotein
• Biological source: INFLUENZA A VIRUS
• Total number of polymer chains: 1
• Total formula weight: 59817.56

Authors

Xiong, X.,Lin, Y.P.,Wharton, S.A.,Martin, S.R.,Coombs, P.J.,Vachieri, S.G.,Christodoulou, E.,Walker, P.A.,Liu, J.,Skehel, J.J.,Gamblin, S.J.,Hay, A.J.,Daniels, R.S.,McCauley, J.W. (deposition date: 2012-10-29, release date: 2012-11-07, Last modification date: 2020-07-29)

Primary citation

Lin, Y.P.,Xiong, X.,Wharton, S.A.,Martin, S.R.,Coombs, P.J.,Vachieri, S.G.,Christodoulou, E.,Walker, P.A.,Liu, J.,Skehel, J.J.,Gamblin, S.J.,Hay, A.J.,Daniels, R.S.,Mccauley, J.W.
Evolution of the Receptor Binding Properties of the Influenza A(H3N2) Hemagglutinin.
Proc.Natl.Acad.Sci.USA, 109:21474-, 2012

PubMed Abstract: The hemagglutinin (HA) of influenza A(H3N2) virus responsible for the 1968 influenza pandemic derived from an avian virus. On introduction into humans, its receptor binding properties had changed from a preference for avian receptors (α2,3-linked sialic acid) to a preference for human receptors (α2,6-linked sialic acid). By 2001, the avidity of human H3 viruses for avian receptors had declined, and since then the affinity for human receptors has also decreased significantly. These changes in receptor binding, which correlate with increased difficulties in virus propagation in vitro and in antigenic analysis, have been assessed by virus hemagglutination of erythrocytes from different species and quantified by measuring virus binding to receptor analogs using surface biolayer interferometry. Crystal structures of HA-receptor analog complexes formed with HAs from viruses isolated in 2004 and 2005 reveal significant differences in the conformation of the 220-loop of HA1, relative to the 1968 structure, resulting in altered interactions between the HA and the receptor analog that explain the changes in receptor affinity. Site-specific mutagenesis shows the HA1 Asp-225→Asn substitution to be the key determinant of the decreased receptor binding in viruses circulating since 2005. Our results indicate that the evolution of human influenza A(H3N2) viruses since 1968 has produced a virus with a low propensity to bind human receptor analogs, and this loss of avidity correlates with the marked reduction in A(H3N2) virus disease impact in the last 10 y.

PubMed: 23236176
DOI: 10.1073/PNAS.1218841110

Experimental method

X-RAY DIFFRACTION (1.9 Å)