2WNV

Complex between C1q globular heads and deoxyribose

2WNV の概要

• エントリーDOI: 10.2210/pdb2wnv/pdb
• 関連するPDBエントリー: 1PK6 2JG8 2JG9 2WNU
• 分子名称: COMPLEMENT C1Q SUBCOMPONENT SUBUNIT A, COMPLEMENT C1Q SUBCOMPONENT SUBUNIT B, COMPLEMENT C1Q SUBCOMPONENT SUBUNIT C, ... (7 entities in total)
• 機能のキーワード: immune system, c1q, secreted, collagen, complement, recognition, disulfide bond, innate immunity, immune response, pyrrolidone carboxylic acid, disease mutation, complement pathway, glycoprotein, hydroxylation
• 由来する生物種: HOMO SAPIENS (HUMAN); 詳細
• タンパク質・核酸の鎖数: 6
• 化学式量合計: 90544.42

構造登録者

Garlatti, V.,Chouquet, A.,Lunardi, T.,Thielens, N.M.,Arlaud, G.J.,Gaboriaud, C. (登録日: 2009-07-20, 公開日: 2010-05-26, 最終更新日: 2024-11-13)

主引用文献

Garlatti, V.,Chouquet, A.,Lunardi, T.,Vives, R.,Paidassi, H.,Lortat-Jacob, H.,Thielens, N.M.,Arlaud, G.J.,Gaboriaud, C.
Cutting Edge: C1Q Binds Deoxyribose and Heparan Sulfate Through Neighboring Sites of its Recognition Domain.
J.Immunol., 185:808-, 2010

PubMed Abstract: C1q, the recognition subunit of the C1 complex of complement, is an archetypal pattern recognition molecule with the striking ability to sense a wide variety of targets, including a number of altered self-motifs. The recognition properties of its globular domain were further deciphered by means of x-ray crystallography using deoxy-D-ribose and heparan sulfate as ligands. Highly specific recognition of deoxy-D-ribose, involving interactions with Arg C98, Arg C111, and Asn C113, was observed at 1.2 A resolution. Heparin-derived tetrasaccharide interacted more loosely through Lys C129, Tyr C155, and Trp C190. These data together with previous findings define a unique binding area exhibiting both polyanion and deoxy-D-ribose recognition properties, located on the inner face of C1q. DNA and heparin compete for C1q binding but are poor C1 activators compared with immune complexes. How the location of this binding area in C1q may regulate the level of C1 activation is discussed.

PubMed: 20548024
DOI: 10.4049/JIMMUNOL.1000184

実験手法

X-RAY DIFFRACTION (1.25 Å)