2VVD

Crystal structure of the receptor binding domain of the spike protein P1 from bacteriophage PM2

2VVD の概要

• エントリーDOI: 10.2210/pdb2vvd/pdb
• 関連するPDBエントリー: 2VVE 2W0C
• 分子名称: SPIKE PROTEIN P1, CALCIUM ION (3 entities in total)
• 機能のキーワード: viral receptor binding domain, viral protein
• 由来する生物種: PSEUDOALTEROMONAS PHAGE PM2
• 細胞内の位置: Virion: Q9XJR3
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 20245.94

構造登録者

Abrescia, N.G.A.,Grimes, J.M.,Kivela, H.K.,Assenberg, R.,Sutton, G.C.,Butcher, S.J.,Bamford, J.K.H.,Bamford, D.H.,Stuart, D.I. (登録日: 2008-06-06, 公開日: 2008-09-16, 最終更新日: 2024-10-23)

主引用文献

Abrescia, N.G.A.,Grimes, J.M.,Kivela, H.K.,Assenberg, R.,Sutton, G.C.,Butcher, S.J.,Bamford, J.K.H.,Bamford, D.H.,Stuart, D.I.
Insights Into Virus Evolution and Membrane Biogenesis from the Structure of the Marine Lipid-Containing Bacteriophage Pm2.
Mol.Cell, 31:749-, 2008

PubMed Abstract: Recent, primarily structural observations indicate that related viruses, harboring no sequence similarity, infect hosts of different domains of life. One such clade of viruses, defined by common capsid architecture and coat protein fold, is the so-called PRD1-adenovirus lineage. Here we report the structure of the marine lipid-containing bacteriophage PM2 determined by crystallographic analyses of the entire approximately 45 MDa virion and of the outer coat proteins P1 and P2, revealing PM2 to be a primeval member of the PRD1-adenovirus lineage with an icosahedral shell and canonical double beta barrel major coat protein. The view of the lipid bilayer, richly decorated with membrane proteins, constitutes a rare visualization of an in vivo membrane. The viral membrane proteins P3 and P6 are organized into a lattice, suggesting a possible assembly pathway to produce the mature virus.

PubMed: 18775333
DOI: 10.1016/J.MOLCEL.2008.06.026

実験手法

X-RAY DIFFRACTION (2.26 Å)