2VFS

Alditol Oxidase from Streptomyces coelicolor A3(2): Complex with Xylitol

2VFS の概要

• エントリーDOI: 10.2210/pdb2vfs/pdb
• 関連するPDBエントリー: 2VFR 2VFT 2VFU 2VFV
• 分子名称: XYLITOL OXIDASE, FLAVIN-ADENINE DINUCLEOTIDE, Xylitol, ... (5 entities in total)
• 機能のキーワード: fad, sugar, polyol, flavin, oxidase, flavoprotein, oxidoreductase
• 由来する生物種: STREPTOMYCES COELICOLOR
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 45843.03

構造登録者

Forneris, F.,Mattevi, A. (登録日: 2007-11-05, 公開日: 2008-01-08, 最終更新日: 2024-11-20)

主引用文献

Forneris, F.,Heuts, D.P.H.M.,Delvecchio, M.,Rovida, S.,Fraaije, M.W.,Mattevi, A.
Structural Analysis of the Catalytic Mechanism and Stereoselectivity in Streptomyces Coelicolor Alditol Oxidase.
Biochemistry, 47:978-, 2008

PubMed Abstract: Alditol oxidase (AldO) from Streptomyces coelicolor A3(2) is a soluble monomeric flavin-dependent oxidase that performs selective oxidation of the terminal primary hydroxyl group of several alditols. Here, we report the crystal structure of the recombinant enzyme in its native state and in complex with both six-carbon (mannitol and sorbitol) and five-carbon substrates (xylitol). AldO shares the same folding topology of the members of the vanillyl-alcohol oxidase family of flavoenzymes and exhibits a covalently linked FAD which is located at the bottom of a funnel-shaped pocket that forms the active site. The high resolution of the three-dimensional structures highlights a well-defined hydrogen-bonding network that tightly constrains the substrate in the productive conformation for catalysis. Substrate binding occurs through a lock-and-key mechanism and does not induce conformational changes with respect to the ligand-free protein. A network of charged residues is proposed to favor catalysis through stabilization of the deprotonated form of the substrate. A His side chain acts as back door that "pushes" the substrate-reactive carbon atom toward the N5-C4a locus of the flavin. Analysis of the three-dimensional structure reveals possible pathways for diffusion of molecular oxygen and a small cavity on the re side of the flavin that may host oxygen during FAD reoxidation. These features combined with the tight shape of the catalytic site provide insights into the mechanism of AldO-mediated regioselective oxidation reactions and its substrate specificity.

PubMed: 18154360
DOI: 10.1021/BI701886T

実験手法

X-RAY DIFFRACTION (1.6 Å)