2V88

Crystal structure of RAG2-PHD finger in complex with H3R2me2sK4me2 peptide

Summary for 2V88

Related2V86 2V87 2A23 2V83 2V85 2V89
DescriptorVDJ RECOMBINATION-ACTIVATING PROTEIN 2, H3R2ME2SK4ME3 PEPTIDE, ZINC ION, ... (4 entities in total)
Functional Keywordsv(d)j recombination, covalent modifications, rag, histone, nucleus, nuclease, hydrolase, phd finger, dna-binding, recombinase, endonuclease, dimethyl lysine, dna recombination, protein binding, symmetric dimethylated arginine
Biological sourceMUS MUSCULUS (HOUSE MOUSE)
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Total number of polymer chains4
Total molecular weight20786.73
Authors
Ramon-Maiques, S.,Yang, W. (deposition date: 2007-08-03, release date: 2007-12-11, Last modification date: 2019-05-08)
Primary citation
Ramon-Maiques, S.,Kuo, A.J.,Carney, D.,Matthews, A.G.W.,Oettinger, M.A.,Gozani, O.,Yang, W.
The Plant Homeodomain Finger of Rag2 Recognizes Histone H3 Methylated at Both Lysine-4 and Arginine-2.
Proc.Natl.Acad.Sci.USA, 104:18993-, 2007
PubMed: 18025461 (PDB entries with the same primary citation)
DOI: 10.1073/PNAS.0709170104
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (2 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.2256 1.2% 2.8% 8.3%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

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More Biological unit images

Molmil generated image of 2v88
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Molmil generated image of 2v88
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(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (2v88.pdb2.gz [18.09 KB])
Coordinate files for Biological unit (2v88.pdb1.gz [18.51 KB])