2V0V

Crystal Structure of Rev-Erb beta

2V0V の概要

• エントリーDOI: 10.2210/pdb2v0v/pdb
• 分子名称: ORPHAN NUCLEAR RECEPTOR NR1D2 (2 entities in total)
• 機能のキーワード: zinc, receptor, repressor, zinc-finger, dna-binding, constitutive repression, transcription regulation, orphan receptor, a-helical sandwich, transcription, metal-binding, nuclear protein
• 由来する生物種: HOMO SAPIENS (HUMAN)
• タンパク質・核酸の鎖数: 4
• 化学式量合計: 87776.66

構造登録者

Woo, E.-J.,Jeong, D.G.,Lim, M.-Y.,Jun Kim, S.,Eon Ryu, S. (登録日: 2007-05-19, 公開日: 2007-10-23, 最終更新日: 2024-05-08)

主引用文献

Woo, E.-J.,Jeong, D.G.,Lim, M.-Y.,Jun Kim, S.,Kim, K.-J.,Yoon, S.-M.,Park, B.-C.,Eon Ryu, S.
Structural Insight Into the Constitutive Repression Function of the Nuclear Receptor Rev-Erbbeta
J.Mol.Biol., 373:735-, 2007

PubMed Abstract: The Rev-erb family is an orphan nuclear receptor acting as a negative regulator of transcription. Rev-erbalpha and Rev-erbbeta are crucial components of the circadian clock and involved in various lipid homeostasis. They are unique nuclear receptors that lack the activation function 2 helix (AF2-helix) required for ligand-dependent activation by other members of nuclear receptors. Here, we report the crystal structure of Rev-erbbeta (NR1D2) in a dimeric arrangement. The putative ligand-binding pocket (LBP) of Rev-erbbeta is filled with bulky hydrophobic residues resulting in a residual cavity size that is too small to allow binding of any known ligand molecules. However, an alternative conformation of the putative LBP observed in another crystal form suggests the flexibility of this region. The kinked conformation of helix H11 allows helix H11 to bend toward helix H3 over the putative ligand binding pocket by filling and closing the cavity with its side-chains. In the absence of the AF2-helix and a cognate ligand, Rev-erbbeta appears to stabilize the hydrophobic cluster in the putative ligand binding pocket and provide a structural platform for co-repressor binding by adopting the unique geometry of helix H11, a suitable conformation for the constitutive repression activity.

PubMed: 17870090
DOI: 10.1016/J.JMB.2007.08.037

実験手法

X-RAY DIFFRACTION (2.4 Å)