2QIE

Staphylococcus aureus molybdopterin synthase in complex with precursor Z

Summary for 2QIE

• Entry DOI: 10.2210/pdb2qie/pdb
• Related: 1FM0 1FMA 1NVI 1NVJ 2Q5W 3BII
• Descriptor: Molybdopterin-converting factor subunit 2, Molybdopterin synthase small subunit, (2R,4AR,5AR,11AR,12AS)-8-AMINO-2-HYDROXY-4A,5A,9,11,11A,12A-HEXAHYDRO[1,3,2]DIOXAPHOSPHININO[4',5':5,6]PYRANO[3,2-G]PTERIDINE-10,12(4H,6H)-DIONE 2-OXIDE, ... (4 entities in total)
• Functional Keywords: molybdopterin, moco, mpt synthase, moad, moae, transferase, molybdenum cofactor biosynthesis, beta-grasp (ubiquitin-like), alpha beta hammerhead fold
• Biological source: Staphylococcus aureus; More
• Total number of polymer chains: 8
• Total formula weight: 106391.81

Authors

Daniels, J.N.,Schindelin, H. (deposition date: 2007-07-04, release date: 2008-02-19, Last modification date: 2023-08-30)

Primary citation

Daniels, J.N.,Wuebbens, M.M.,Rajagopalan, K.V.,Schindelin, H.
Crystal structure of a molybdopterin synthase-precursor Z complex: insight into its sulfur transfer mechanism and its role in molybdenum cofactor deficiency.
Biochemistry, 47:615-626, 2008

PubMed Abstract: In almost all biological life forms, molybdenum and tungsten are coordinated by molybdopterin (MPT), a tricyclic pyranopterin containing a cis-dithiolene group. Together, the metal and the pterin moiety form the redox reactive molybdenum cofactor (Moco). Mutations in patients with deficiencies in Moco biosynthesis usually occur in the enzymes catalyzing the first and second steps of biosynthesis, leading to the formation of precursor Z and MPT, respectively. The second step is catalyzed by the heterotetrameric MPT synthase protein consisting of two large (MoaE) and two small (MoaD) subunits with the MoaD subunits located at opposite ends of a central MoaE dimer. Previous studies have determined that the conversion of the sulfur- and metal-free precursor Z to MPT by MPT synthase involves the transfer of sulfur atoms from a C-terminal MoaD thiocarboxylate to the C-1' and C-2' positions of precursor Z. Here, we present the crystal structures of non-thiocarboxylated MPT synthase from Staphylococcus aureus in its apo form and in complex with precursor Z. A comparison of the two structures reveals conformational changes in a loop that participates in interactions with precursor Z. In the complex, precursor Z is bound by strictly conserved residues in a pocket at the MoaE dimer interface in close proximity of the C-terminal glycine of MoaD. Biochemical evidence indicates that the first dithiolene sulfur is added at the C-2' position.

PubMed: 18092812
DOI: 10.1021/bi701734g

Experimental method

X-RAY DIFFRACTION (2.5 Å)