2QBW

The crystal structure of PDZ-Fibronectin fusion protein

2QBW の概要

• エントリーDOI: 10.2210/pdb2qbw/pdb
• 分子名称: PDZ-Fibronectin fusion protein, Polypeptide (3 entities in total)
• 機能のキーワード: fibronectin pdz, unknown function
• 由来する生物種: Homo sapiens (human); 詳細
• 細胞内の位置: Cell junction, hemidesmosome: Q96RT1
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 21886.15

構造登録者

Huang, J.,Makabe, K.,Koide, A.,Koide, S. (登録日: 2007-06-18, 公開日: 2008-04-22, 最終更新日: 2024-02-21)

主引用文献

Huang, J.,Koide, A.,Makabe, K.,Koide, S.
Design of protein function leaps by directed domain interface evolution.
Proc.Natl.Acad.Sci.Usa, 105:6578-6583, 2008

PubMed Abstract: Most natural proteins performing sophisticated tasks contain multiple domains where an active site is located at the domain interface. Comparative structural analyses suggest that major leaps in protein function occur through gene recombination events that connect two or more protein domains to generate a new active site, frequently occurring at the newly created domain interface. However, such functional leaps by combination of unrelated domains have not been directly demonstrated. Here we show that highly specific and complex protein functions can be generated by joining a low-affinity peptide-binding domain with a functionally inert second domain and subsequently optimizing the domain interface. These directed evolution processes dramatically enhanced both affinity and specificity to a level unattainable with a single domain, corresponding to >500-fold and >2,000-fold increases of affinity and specificity, respectively. An x-ray crystal structure revealed that the resulting "affinity clamp" had clamshell architecture as designed, with large additional binding surface contributed by the second domain. The affinity clamps having a single-nanomolar dissociation constant outperformed a monoclonal antibody in immunochemical applications. This work establishes evolutionary paths from isolated domains with primitive function to multidomain proteins with sophisticated function and introduces a new protein-engineering concept that allows for the generation of highly functional affinity reagents to a predefined target. The prevalence and variety of natural interaction domains suggest that numerous new functions can be designed by using directed domain interface evolution.

PubMed: 18445649
DOI: 10.1073/pnas.0801097105

実験手法

X-RAY DIFFRACTION (1.8 Å)