2OEA

High-pressure structure of pseudo-WT T4 Lysozyme

2OEA の概要

• エントリーDOI: 10.2210/pdb2oea/pdb
• 関連するPDBエントリー: 2B6T 2OE4 2OE7 2OE9
• 分子名称: Lysozyme, CHLORIDE ION, BETA-MERCAPTOETHANOL, ... (4 entities in total)
• 機能のキーワード: high-pressure, t4 lysozyme, hydrolase
• 由来する生物種: Enterobacteria phage T4
• 細胞内の位置: Host cytoplasm : P00720
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 18855.53

構造登録者

Collins, M.D.,Quillin, M.L.,Matthews, B.W.,Gruner, S.M. (登録日: 2006-12-28, 公開日: 2007-01-30, 最終更新日: 2023-08-30)

主引用文献

Collins, M.D.,Quillin, M.L.,Hummer, G.,Matthews, B.W.,Gruner, S.M.
Structural Rigidity of a Large Cavity-containing Protein Revealed by High-pressure Crystallography.
J.Mol.Biol., 367:752-763, 2007

PubMed Abstract: Steric constraints, charged interactions and many other forces important to protein structure and function can be explored by mutagenic experiments. Research of this kind has led to a wealth of knowledge about what stabilizes proteins in their folded states. To gain a more complete picture requires that we perturb these structures in a continuous manner, something mutagenesis cannot achieve. With high pressure crystallographic methods it is now possible to explore the detailed properties of proteins while continuously varying thermodynamic parameters. Here, we detail the structural response of the cavity-containing mutant L99A of T4 lysozyme, as well as its pseudo wild-type (WT*) counterpart, to hydrostatic pressure. Surprisingly, the cavity has almost no effect on the pressure response: virtually the same changes are observed in WT* as in L99A under pressure. The cavity is most rigid, while other regions deform substantially. This implies that while some residues may increase the thermodynamic stability of a protein, they may also be structurally irrelevant. As recently shown, the cavity fills with water at pressures above 100 MPa while retaining its overall size. The resultant picture of the protein is one in which conformationally fluctuating side groups provide a liquid-like environment, but which also contribute to the rigidity of the peptide backbone.

PubMed: 17292912
DOI: 10.1016/j.jmb.2006.12.021

実験手法

X-RAY DIFFRACTION (2.01 Å)