2KXV

NMR structure and calcium-binding properties of the tellurite resistance protein TerD from Klebsiella pneumoniae

Summary for 2KXV

• Entry DOI: 10.2210/pdb2kxv/pdb
• Related: 2KXT
• NMR Information: BMRB: 16929
• Descriptor: Tellurite resistance protein, CALCIUM ION (2 entities in total)
• Functional Keywords: kp-terd, tellurite resistance, ca2+ binding protein, calcium signaling, unknown function
• Biological source: Klebsiella pneumoniae
• Total number of polymer chains: 1
• Total formula weight: 21665.84

Authors

Pan, Y.R.,Lou, Y.C.,Rizo, J.,Chen, C. (deposition date: 2010-05-13, release date: 2010-12-22, Last modification date: 2024-05-01)

Primary citation

Pan, Y.R.,Lou, Y.C.,Seven, A.B.,Rizo, J.,Chen, C.
NMR Structure and Calcium-Binding Properties of the Tellurite Resistance Protein TerD from Klebsiella pneumoniae
J.Mol.Biol., 2010

PubMed Abstract: The tellurium oxyanion TeO(3)(2-) has been used in the treatment of infectious diseases caused by mycobacteria. However, many pathogenic bacteria show tellurite resistance. Several tellurite resistance genes have been identified, and these genes mediate responses to diverse extracellular stimuli, but the mechanisms underlying their functions are unknown. To shed light on the function of KP-TerD, a 20.5 -kDa tellurite resistance protein from a plasmid of Klebsiella pneumoniae, we have determined its three-dimensional structure in solution using NMR spectroscopy. KP-TerD contains a β-sandwich formed by two five-stranded β-sheets and six short helices. The structure exhibits two negative clusters in loop regions on the top of the sandwich, suggesting that KP-TerD may bind metal ions. Indeed, thermal denaturation experiments monitored by circular dichroism and NMR studies reveal that KP-TerD binds Ca(2+). Inductively coupled plasma-optical emission spectroscopy shows that the binding ratio of KP-TerD to Ca(2+) is 1:2. EDTA (ethylenediaminetetraacetic acid) titrations of Ca(2+)-saturated KP-TerD monitored by one-dimensional NMR yield estimated dissociation constants of 18  and 200 nM for the two Ca(2+)-binding sites of KP-TerD. NMR structures incorporating two Ca(2+) ions define a novel bipartite Ca(2)(+)-binding motif that is predicted to be highly conserved in TerD proteins. Moreover, these Ca(2+)-binding sites are also predicted to be present in two additional tellurite resistance proteins, TerE and TerZ. These results suggest that some form of Ca(2+) signaling plays a crucial role in tellurite resistance and in other responses of bacteria to multiple external stimuli that depend on the Ter genes.

PubMed: 21112337
DOI: 10.1016/j.jmb.2010.11.041

Experimental method

SOLUTION NMR