2JZ7

Solution NMR structure of selenium-binding protein from Methanococcus Vannielii

Summary for 2JZ7

• Entry DOI: 10.2210/pdb2jz7/pdb
• Descriptor: Selenium binding protein (1 entity in total)
• Functional Keywords: selenium, selenium-binding protein
• Biological source: Methanococcus vannielii
• Total number of polymer chains: 5
• Total formula weight: 44060.86

Authors

Suzuki, M.,Stadtman, T.C.,Tjandra, N. (deposition date: 2007-12-28, release date: 2008-07-22, Last modification date: 2024-05-29)

Primary citation

Suzuki, M.,Lee, D.Y.,Inyamah, N.,Stadtman, T.C.,Tjandra, N.
Solution NMR Structure of Selenium-binding Protein from Methanococcus vannielii.
J.Biol.Chem., 283:25936-25943, 2008

PubMed Abstract: Selenium is an important nutrient. The lack of selenium will suppress expression of various enzymes that will lead to cell abnormality and diseases. However, high concentrations of free selenium are toxic to the cell because it adversely affects numerous cell metabolic pathways. In Methanococcus vannielii, selenium transport in the cell is established by the selenium-binding protein, SeBP. SeBP sequesters selenium during transport, thus regulating the level of free selenium in the cell, and delivers it specifically to the selenophosphate synthase enzyme. In solution, SeBP is an oligomer of 8.8-kDa subunits. It is a symmetric pentamer. The solution structure of SeBP was determined by NMR spectroscopy. Each subunit of SeBP is composed of an alpha-helix on top of a 4-stranded twisted beta-sheet. The stability of the five subunits stems mainly from hydrophobic interactions and supplemented by hydrogen bond interactions. The loop containing Cys(59) has been shown to be important for selenium binding, is flexible, and adopts multiple conformations. However, the cysteine accessibility is restricted in the structure, reducing the possibility of the binding of free selenium readily. Therefore, a different selenium precursor or other factors might be needed to facilitate opening of this loop to expose Cys(59) for selenium binding.

PubMed: 18650445
DOI: 10.1074/jbc.M803773200

Experimental method

SOLUTION NMR