2JDZ

Crystal structure of recombinant Dioclea guianensis lectin complexed with 5-bromo-4-chloro-3-indolyl-a-D-mannose

Summary for 2JDZ

• Entry DOI: 10.2210/pdb2jdz/pdb
• Related: 1H9P 1H9W 2JE7 2JE9 2JEC
• Descriptor: LECTIN ALPHA CHAIN, MANGANESE (II) ION, CALCIUM ION, ... (6 entities in total)
• Functional Keywords: carbohydrate-binding protein, metal-binding, legume lectin
• Biological source: DIOCLEA GUIANENSIS
• Total number of polymer chains: 1
• Total formula weight: 26489.17

Authors

Nagano, C.S.,Sanz, L.,Cavada, B.S.,Calvete, J.J. (deposition date: 2007-01-12, release date: 2007-10-30, Last modification date: 2023-12-13)

Primary citation

Nagano, C.S.,Calvete, J.J.,Barettino, D.,Perez, A.,Cavada, B.S.,Sanz, L.
Insights Into the Structural Basis of the Ph-Dependent Dimer-Tetramer Equilibrium Through Crystallographic Analysis of Recombinant Diocleinae Lectins.
Biochem.J., 409:417-, 2008

PubMed Abstract: The structural ground underlying the pH-dependency of the dimer-tetramer transition of Diocleinae lectins was investigated by equilibrium sedimentation and X-ray crystal structure determination of wild-type and site-directed mutants of recombinant lectins. Synthetic genes coding for the full-length alpha-chains of the seed lectins of Dioclea guianensis (termed r-alphaDguia) and Dioclea grandiflora (termed r-alphaDGL) were designed and expressed in Escherichia coli. This pioneering approach, which will be described in detail in the present paper, yielded recombinant lectins displaying carbohydrate-binding activity, dimer-tetramer equilibria and crystal structures indistinguishable from their natural homologues. Conversion of the pH-stable tetrameric r-alphaDGL into a structure exhibiting pH-dependent dimer-tetramer transition was accomplished through mutations that abolished the interdimeric interactions at the central cavity of the tetrameric lectins. Both the central and the peripheral interacting regions bear structural information for formation of the canonical legume lectin tetramer. We hypothesize that the strength of the ionic contacts at these sites may be modulated by the pH, leading to dissociation of those lectin structures that are not locked into a pH-stable tetramer through interdimeric contacts networking the central cavity loops.

PubMed: 17937659
DOI: 10.1042/BJ20070942

Experimental method

X-RAY DIFFRACTION (2.1 Å)