2F3W

solution structure of 1-110 fragment of staphylococcal nuclease in 2M TMAO

2F3W の概要

• エントリーDOI: 10.2210/pdb2f3w/pdb
• 関連するPDBエントリー: 1RKN 2F3V
• NMR情報: BMRB: 6908
• 分子名称: Thermonuclease (1 entity in total)
• 機能のキーワード: ob-fold, hydrolase
• 由来する生物種: Staphylococcus aureus
• 細胞内の位置: Nuclease A: Secreted. Nuclease B: Membrane: P00644
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 12325.40

構造登録者

Liu, D.,Xie, T.,Feng, Y.,Shan, L.,Ye, K.,Wang, J. (登録日: 2005-11-22, 公開日: 2006-12-05, 最終更新日: 2024-05-29)

主引用文献

Xie, T.,Liu, D.,Feng, Y.,Shan, L.,Wang, J.
Folding stability and cooperativity of the three forms of 1-110 residues fragment of staphylococcal nuclease
Biophys.J., 92:2090-2107, 2007

PubMed Abstract: Folding stability and cooperativity of the three forms of 1-110 residues fragment of staphylococcal nuclease (SNase110) have been studied by various biophysical and NMR methods. Samples of G-88W- and V-66W-mutant SNase110, namely G-88W110 and V-66W110, in aqueous solution and SNase110 in 2.0 M TMAO are adopted in this study. The unfolding transitions and folded conformations of the three SNase fragments were detected by far- and near-ultraviolet circular dichroism and intrinsic tryptophan fluorescence measurements. The tertiary structures and internal motions of the fragments were determined by NMR spectroscopy. Both G-88W and V-66W single mutations as well as a small organic osmolyte (Trimethylamine N-oxide, TMAO) can fold the fragment into a native-like conformation. However, the tertiary structures of the three fragments exhibit different degrees of folding stability and compactness. G-88W110 adopts a relatively rigid structure representing a most stable native-like beta-subdomain conformation of the three fragments. V-66W110- and TMAO-stabilized SNase110 produce less compact structures having a less stable "beta-barrel" structural region. The different folding status accounts for the different backbone dynamic and urea-unfolding transition features of the three fragments. The G-20I/G-29I-mutant variants of the three fragments have provided the evidence that the folding status is correlated closely to the packing of the beta-strands in the beta-barrel of the fragments. The native-like beta-barrel structural region acts as a nonlocal nucleus for folding the fragment. The tertiary folding of the three fragments is initiated by formation of the local nucleation sites at two beta-turn regions, I-18-D-21 and Y-27-Q-30, and developed by the formation of a nonlocal nucleation site at the beta-barrel region. The formation of beta-barrel and overall structure is concerted, but the level of cooperativity is different for the three 1-110 residues SNase fragments.

PubMed: 17172296
DOI: 10.1529/biophysj.106.092155

実験手法

SOLUTION NMR