2CJ1

chloroperoxidase complexed with formate (ethylene glycol cryoprotectant)

2CJ1 の概要

• エントリーDOI: 10.2210/pdb2cj1/pdb
• 関連するPDBエントリー: 1CPO 2CIV 2CIW 2CIX 2CIY 2CIZ 2CJ0 2CJ2 2CPO
• 関連するBIRD辞書のPRD_ID: PRD_900111
• 分子名称: CHLOROPEROXIDASE, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose, ... (10 entities in total)
• 機能のキーワード: oxidoreductase, heme, iron, chloride, manganese, peroxidase, pyrrolidone carboxylic acid, glycoprotein, metal-binding
• 由来する生物種: CALDARIOMYCES FUMAGO
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 37021.53

構造登録者

Kuhnel, K.,Blankenfeldt, W.,Terner, J.,Schlichting, I. (登録日: 2006-03-26, 公開日: 2006-06-12, 最終更新日: 2024-11-13)

主引用文献

Kuhnel, K.,Blankenfeldt, W.,Terner, J.,Schlichting, I.
Crystal Structures of Chloroperoxidase with its Bound Substrates and Complexed with Formate, Acetate, and Nitrate.
J.Biol.Chem., 281:23990-, 2006

PubMed Abstract: Chloroperoxidase (CPO) is a heme-thiolate enzyme that catalyzes hydrogen peroxide-dependent halogenation reactions. Structural data on substrate binding have not been available so far. CPO was therefore crystallized in the presence of iodide or bromide. One halide binding site was identified at the surface near a narrow channel that connects the surface with the heme. Two other halide binding sites were identified within and at the other end of this channel. Together, these sites suggest a pathway for access of halide anions to the active site. The structure of CPO complexed with its natural substrate cyclopentanedione was determined at a resolution of 1.8 A. This is the first example of a CPO structure with a bound organic substrate. In addition, structures of CPO bound with nitrate, acetate, and formate and of a ternary complex with dimethylsulfoxide (Me2SO) and cyanide were determined. These structures have implications for the mechanism of compound I formation. Before binding to the heme, the incoming hydrogen peroxide first interacts with Glu-183. The deprotonated Glu-183 abstracts a proton from hydrogen peroxide. The hydroperoxo-anion then binds at the heme, yielding compound 0. Glu-183 protonates the distal oxygen of compound 0, water is released, and compound I is formed.

PubMed: 16790441
DOI: 10.1074/JBC.M603166200

実験手法

X-RAY DIFFRACTION (1.7 Å)