2BK6

The X-ray crystal structure of the Listeria innocua H31G Dps mutant.

2BK6 の概要

• エントリーDOI: 10.2210/pdb2bk6/pdb
• 関連するPDBエントリー: 1QGH 2BJY
• 分子名称: NON-HEME IRON-CONTAINING FERRITIN (2 entities in total)
• 機能のキーワード: dps (dna binding protein from starved cells), ferroxidase center, mutagenesis study, iron oxidation and storage, metal transport
• 由来する生物種: LISTERIA INNOCUA
• 細胞内の位置: Cytoplasm : P80725
• タンパク質・核酸の鎖数: 6
• 化学式量合計: 107936.75

構造登録者

Ilari, A.,Latella, M.C.,Ribacchi, F.,Su, M.,Giangiacomo, L.,Stefanini, S.,Chasteen, N.D.,Chiancone, E. (登録日: 2005-02-11, 公開日: 2005-02-14, 最終更新日: 2023-12-13)

主引用文献

Ilari, A.,Latella, M.C.,Ceci, P.,Ribacchi, F.,Su, M.,Giangiacomo, L.,Stefanini, S.,Chasteen, N.D.,Chiancone, E.
The unusual intersubunit ferroxidase center of Listeria innocua Dps is required for hydrogen peroxide detoxification but not for iron uptake. A study with site-specific mutants.
Biochemistry, 44:5579-5587, 2005

PubMed Abstract: The role of the ferroxidase center in iron uptake and hydrogen peroxide detoxification was investigated in Listeria innocua Dps by substituting the iron ligands His31, His43, and Asp58 with glycine or alanine residues either individually or in combination. The X-ray crystal structures of the variants reveal only small alterations in the ferroxidase center region compared to the native protein. Quenching of the protein fluorescence was exploited to assess stoichiometry and affinity of metal binding. Substitution of either His31 or His43 decreases Fe(II) affinity significantly with respect to wt L. innocua Dps (K approximately 10(5) vs approximately 10(7) M(-)(1)) but does not alter the binding stoichiometry [12 Fe(II)/dodecamer]. In the H31G-H43G and H31G-H43G-D58A variants, binding of Fe(II) does not take place with measurable affinity. Oxidation of protein-bound Fe(II) increases the binding stoichiometry to 24 Fe(III)/dodecamer. However, the extent of fluorescence quenching upon Fe(III) binding decreases, and the end point near 24 Fe(III)/dodecamer becomes less distinct with increase in the number of mutated residues. In the presence of dioxygen, the mutations have little or no effect on the kinetics of iron uptake and in the formation of micelles inside the protein shell. In contrast, in the presence of hydrogen peroxide, with increase in the number of substitutions the rate of iron oxidation and the capacity to inhibit Fenton chemistry, thereby protecting DNA from oxidative damage, appear increasingly compromised, a further indication of the role of ferroxidation in conferring peroxide tolerance to the bacterium.

PubMed: 15823016
DOI: 10.1021/bi050005e

実験手法

X-RAY DIFFRACTION (2.19 Å)