2AV6

X-Ray studies on maltodextrin phosphorylase complexes: recognition of substrates and cathalitic mechanism of phosphorylase family

2AV6 の概要

• エントリーDOI: 10.2210/pdb2av6/pdb
• 関連するPDBエントリー: 1L5V 1L5W 1L6I 1QM5
• 分子名称: Maltodextrin phosphorylase, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-beta-D-glucopyranose, NITRATE ION, ... (5 entities in total)
• 機能のキーワード: maltopentaose, carbohydrate recognition, phosphorylase mechanism, ternary complexes with natural and inhibitory substrates, transferase
• 由来する生物種: Escherichia coli
• タンパク質・核酸の鎖数: 2
• 化学式量合計: 183369.86

構造登録者

Geremia, S.,Campagnolo, M. (登録日: 2005-08-29, 公開日: 2005-09-06, 最終更新日: 2023-10-25)

主引用文献

Campagnolo, M.,Campa, C.,Zorzi, R.D.,Wuerges, J.,Geremia, S.
X-ray studies on ternary complexes of maltodextrin phosphorylase.
Arch.Biochem.Biophys., 471:11-19, 2008

PubMed Abstract: We report crystal structures of ternary complexes of maltodextrin phosphorylase with natural oligosaccharide and phosphate mimicking anions: nitrate, sulphate and vanadate. Electron density maps obtained from crystals grown in presence of Al(NO3)3 show a nitrate ion instead of the expected AlF4- in the catalytic site. The trigonal NO3- is coplanar with the Arg569 guanidinium group and mimics three of the four oxygen atoms of phosphate. The ternary complex with sulphate shows a partial occupancy of the anionic site. The low affinity of the sulphate ion, observed when the alpha-glucosyl substrate is present in the catalytic channel, is ascribed to restricted space for the anion. Even lower occupancy is observed for the larger vanadate anion. The Malp/G5/VO43- structure shows the partial occupancy of the oligosaccharide and the dislocation of the 380's loop. This has been attributed to the formation of oligosaccharide vanadate derivatives (confirmed by capillary electrophoresis) that reduces their effective concentration. The difficulty to trap a ternary complex mimicking the ground state has been correlated to the apparent lower affinity that natural substrates show regarding the intermediates of the enzymatic reaction.

PubMed: 18164678
DOI: 10.1016/j.abb.2007.11.023

実験手法

X-RAY DIFFRACTION (2.01 Å)