2AKJ

Structure of spinach nitrite reductase

2AKJ の概要

• エントリーDOI: 10.2210/pdb2akj/pdb
• 分子名称: Ferredoxin--nitrite reductase, chloroplast, IRON/SULFUR CLUSTER, SIROHEME, ... (4 entities in total)
• 機能のキーワード: x-ray crystallography; heme; electron transport, oxidoreductase
• 由来する生物種: Spinacia oleracea (spinach)
• 細胞内の位置: Plastid, chloroplast: P05314
• タンパク質・核酸の鎖数: 1
• 化学式量合計: 69293.02

構造登録者

Swamy, U.,Wang, M.,Tripathy, J.N.,Kim, S.-K.,Hirasawa, M.,Knaff, D.B.,Allen, J.P. (登録日: 2005-08-03, 公開日: 2006-01-24, 最終更新日: 2023-12-27)

主引用文献

Swamy, U.,Wang, M.,Tripathy, J.N.,Kim, S.K.,Hirasawa, M.,Knaff, D.B.,Allen, J.P.
Structure of Spinach Nitrite Reductase: Implications for Multi-electron Reactions by the Iron-Sulfur:Siroheme Cofactor
Biochemistry, 44:16054-16063, 2005

PubMed Abstract: The structure of nitrite reductase, a key enzyme in the process of nitrogen assimilation, has been determined using X-ray diffraction to a resolution limit of 2.8 A. The protein has a globular fold consisting of 3 alpha/beta domains with the siroheme-iron sulfur cofactor at the interface of the three domains. The Fe(4)S(4) cluster is coordinated by cysteines 441, 447, 482, and 486. The siroheme is located at a distance of 4.2 A from the cluster, and the central iron atom is coordinated to Cys 486. The siroheme is surrounded by several ionizable amino acid residues that facilitate the binding and subsequent reduction of nitrite. A model for the ferredoxin:nitrite reductase complex is proposed in which the binding of ferredoxin to a positively charged region of nitrite reductase results in elimination of exposure of the cofactors to the solvent. The structure of nitrite reductase shows a broad similarity to the hemoprotein subunit of sulfite reductase but has many significant differences in the backbone positions that could reflect sequence differences or could arise from alterations of the sulfite reductase structure that arise from the isolation of this subunit from the native complex. The implications of the nitrite reductase structure for understanding multi-electron processes are discussed in terms of differences in the protein environments of the cofactors.

PubMed: 16331965
DOI: 10.1021/bi050981y

実験手法

X-RAY DIFFRACTION (2.8 Å)