1ZRV

solution structure of spinigerin in H20/TFE 50%

Summary for 1ZRV

• Entry DOI: 10.2210/pdb1zrv/pdb
• Related: 1ZRW 1ZRX
• Descriptor: spinigerin (1 entity in total)
• Functional Keywords: helical peptide in tfe, antimicrobial protein, antibiotic
• Cellular location: Secreted: P82357
• Total number of polymer chains: 1
• Total formula weight: 3008.80

Authors

Landon, C.,Meudal, H.,Boulanger, N.,Bulet, P.,Vovelle, F. (deposition date: 2005-05-23, release date: 2005-10-04, Last modification date: 2024-05-22)

Primary citation

Landon, C.,Meudal, H.,Boulanger, N.,Bulet, P.,Vovelle, F.
Solution structures of stomoxyn and spinigerin, two insect antimicrobial peptides with an alpha-helical conformation.
Biopolymers, 81:92-103, 2006

PubMed Abstract: Stomoxyn and spinigerin belong to the class of linear cysteine-free insect antimicrobial peptides that kill a range of microorganisms, parasites, and some viruses but without any lytic activity against mammalian erythrocytes. Stomoxyn is localized in the gut epithelium of the nonvector stable fly that is sympatric with the trypanosome vector tsetse fly. Spinigerin is stored and secreted by hemocytes from the fungus-growing termite. The structure of synthetic stomoxyn and spinigerin in aqueous solution and in TFE/water mixtures was analyzed by CD and NMR spectroscopy combined with molecular modeling calculations. Stomoxyn and spinigerin adopt a flexible random coil structure in water while both assume a stable helical structure in the presence of TFE. In 50% TFE, the structure of stomoxyn is typical of cecropins, including an amphipathic helix at the N-terminus and a hydrophobic C-terminus with helical features that probably fold in a helical conformation at higher TFE concentration. In contrast to stomoxyn, spinigerin acquires very rapidly a helical conformation. In 10% TFE the helix is highly bent and the structure is poorly defined. In 50% TFE, the helical structure is well defined all along its sequence, and the slightly bent alpha-helix displays an amphiphilic character, as observed for magainin 2. The structural similarities between stomoxyn and cecropin A from Hyalophora cecropia and between spinigerin and magainin 2 suggest a similar mode of action on the bacterial membranes of both pairs of peptides. Our results also confirm that TFE induces helix formation and propagation for amino acids showing helical propensity in water but also enhances the helix propagation propensity of nonpolar beta-branched residues.

PubMed: 16170803
DOI: 10.1002/bip.20370

Experimental method

SOLUTION NMR